Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05713 ATGACTCAAGATCTTGAGATGAAAGATCGTTCTACTCCTTCCAACTCTATTTCTCCACCTGTTCCATCTACTCTGCAGCATTTGAAGGAGATAGCATCTCTTATCGAGACTGGTTCGTATTCGAAAGAAGTTCGTAGAATTGCTCGTGCTGTTCGTCTCACAATTGCATTAAGGAAGAAATTGACAGCTTCGGTTATTTCATCTTTTCTGGATCATGTTCTCTCTCCTGGTTCTGAGCCTCATGCCAAATTGTCTGCGTATCTTCCCAAGGAGGATGATCATGAGATGGAAGTAGATGCTGCAACCTCTTCCATTCAAACCCTTACAACTAAACATTTGTTGCCCGAGATAGAAATTTTCTGTTACCTGCTTGTACTACTTTTTCTGATTGATCAGAAAAAATACAACGAGGCTAAAGCTTGTTCCTCAGCTAGTGTTGCTTGGTTGAAGAATGTGAACAGAAGAACAGTCGATGTTATTGCATCCAGACTGTTTTTTTACTATTCATACAGCCATGAACTTACTGGCGATCTTGCTGAAATTCGGGGCAACCTCCTTGCGTTGCACCGGATTGCTACCCTACGACATGATGAGTTGGGTCAGGAAACCCTTCTTAATTTGTTACTTCGCAACTATCTTCACTACAACCTATATGATCAGGCTGAGAAGTTGAGGTCAAAAGCTCCACGATTTGAAGCACATTCAAACCAGCAGTTCTGTCGTTATCTCTTCTACCTCGGGAAAATCCGGACCATTCAGTTGGAGTATACAGATGCAAAAGAGTCTCTCCTGCAGGCTGCTCGTAAAGCTCCAGTTGCAGCTCGAGGTTTTCGAATTCAATGTAACAAGTGGGCTATCATAGTCCGTTTACTGTTGGGAGAAATACCTGAAAGGACTGTCTTTATGCAGAAGGGAATGGAGAAAGCGCTGAGGCCTTACTTTGAGCTTACAAATGCTGTCCGCATTGGAGACTTGGAGCTGTTTAGGAACATTGCAGATAAGTTTGCAACCACCTTCAGTGCAGACGGAACTCATAATTTGATTGTTCGCCTGCGGCATAATGTCATCAGGACCGGTTTGCGCAACATCAGCATCTCCTACTCTCGCATCTCACTAGCTGATGTTGCTAAAAAATTGAGGTTGGACTCACCAAATCCTGTTGCTGATGCTGAGAGCATTGTATCAAAGGCTATTCGTGATGGGGCAATTGATGCTACATTGGATCATGCAAATGGGTGGATGGTGTCCAAGGAAACTGGAGATATTTACTCCACTAACGAGCCTCAGCTGGCTTTTAATTCTCGGATTGCCTTCTGTCTTAACATGCACAATGAAGCTGTTAGAGCACTTCGTTTTCCACCAAATACACACAAAGAAAAAGAAAGTGCTGAAAAGAGAAGAGAGAGACAACAGCAAGAGCAAGAACTGGCAAAGCATATTGCAGAGGAGGATGATGATGATTTCTGA 1467 0.4322 MTQDLEMKDRSTPSNSISPPVPSTLQHLKEIASLIETGSYSKEVRRIARAVRLTIALRKKLTASVISSFLDHVLSPGSEPHAKLSAYLPKEDDHEMEVDAATSSIQTLTTKHLLPEIEIFCYLLVLLFLIDQKKYNEAKACSSASVAWLKNVNRRTVDVIASRLFFYYSYSHELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAARGFRIQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFRNIADKFATTFSADGTHNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSPNPVADAESIVSKAIRDGAIDATLDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNTHKEKESAEKRRERQQQEQELAKHIAEEDDDDF 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05713 488 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 16 479 - -
Trre5g05713 488 MobiDBLite consensus disorder prediction 1 22 - -
Trre5g05713 488 SUPERFAMILY "Winged helix" DNA-binding domain 347 422 IPR036390 -
Trre5g05713 488 MobiDBLite consensus disorder prediction 453 488 - -
Trre5g05713 488 Pfam Proteasome regulatory subunit C-terminal 421 487 IPR013586 GO:0000502|GO:0030234|GO:0042176
Trre5g05713 488 Gene3D - 123 437 - -
Trre5g05713 488 Pfam PCI domain 312 417 IPR000717 -
Trre5g05713 488 ProSiteProfiles PCI domain profile. 240 421 IPR000717 -
Trre5g05713 488 SMART PCI/PINT associated module 175 346 - -
Trre5g05713 488 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 346 439 IPR000717 -
Trre5g05713 488 Coils Coil 455 482 - -
Trre5g05713 488 MobiDBLite consensus disorder prediction 453 481 - -
Trre5g05713 488 FunFam 26S proteasome non-ATPase regulatory subunit 3 121 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05713 Trre-Chr5 57158391 57162095 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05713 K03033 - gmx:100814379 877.856
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05713 5 57158391 57162095 Trre5g05713 5 57158391 57162095 ECH
Trre1g00038 1 292972 297737 Trre5g05713 5 57158391 57162095 PCT