Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05710 ATGGTTACGTCCGCGGCTGATTCTTCCGCTACTAACCCTGCCGCCACCAATAGCCCTAATTTCCCGCGAAAAAACCTAACTTCTCCGTGGGCTCAGGTTGTTCGCGGTGCTGATTCCGAACCACTCAACAATCAATCGTCTCCACCGCATCCACCGCCTCAGTCTTCATCATCATCGTCTCTCGATTCGGCCAATTTAGTTGCTGCTATTACTGCTGTTGCTGCTATTGCCGTAGATAACACCAATGCTGATAAGAATAACAACAATGCAGGTAACCCTAAGAAACACGCTTGGAAGAATGCATCCAATGGCGTTGTTGCTGAGGTCAGTCCTGTCATGGGTGCTGTCTCTTGGCCCGCTTTATCTGCTAAGAGTTCTGCTAAATTGACATCTGATTCCTCCTCCGCCGTCACAGAAGGATCAGTCTCCCTTCCGCAGGGACCTATCACTTCAAATTCCCCTCGTAAACAAGCTACTATCACGACCAATACTAATGCTAATACGAAATCTATTCCTCCAATGAACCACGGTGCAACAAGTAGACAAAAACCAATGAAGCGCGGAGGCAGCAACAATAGTAGTAATGAGACCGCTCCTTTTCCGATGAGTTTCTCCAACCCTCCTCATGTTAGTCTTCAGGATGCTCCTCCACCATATCCGGTGGTTCAGATTCCTAATACTGGCTTTGCGGACGGGGTTCAGTCGTACAGGAACAACAATGGCTGGAGTCCTAGATCACCAGTTGGGGGTTATGGGCTGCCGGTGGATGAGCACAGGAACTCCTCTCGCAGGGGTAATTATGGAAATCGTCCACATAACAATTCCGGTATTAGACGCAATCAAGATTCAGGAAATAATGTAAACACTAGAGATGCTCATGCACATCAACATAGGATGCACTCAGGGGGATTTTTGAGGCCTACACTACATAATTCTCCTTCATATCTTGGTTCTCCGTCTATGAGACCTTTTGTAAACACTTTCGAGTTTCATGAATTCTATTACTATCCCACGCTACAATTTGAACCATTCGGAGGGATGCCATTCTTGACGCATGCACCTCCTCCTGCGATGTTCTTTCCTGTTCCAGAAACTCCTGAAAGTCCTGCAGAAACAACATCCGCTGAACTTCCCTTGACCAGTTTAATACTCAAGCAAATTGAGTATTACTTTAGTGATGTTAATTTGGTGAAAGATGACTTTTTGAAATCCAACATGGATGAACAGGGTTGGGTTCCAATTACTCTGATTGCAAACTTCCCCCGAGTTAAAAAATTGACAAACAACATTGAGTTGATTTTGGATTCCATGAGAACTTCGAAAGTTGTGGAAGTGCATGGTGATAAGATGAGGAGGCGTAACGAGTTGATGAGATGCTTGCCCTCCGCACACCAACACCAACTTGCTAGTTCTGGTTCAGTATCCCCAAGCGGATCAAGTTGTAATAACATAGTTGCTGATTTCGATAAGATTACTTTGGACGAAGCAACTGGCCATAAAATTTCCAATGCCACCACGAATGTGGGTTCTGCATGA 1536 0.4551 MVTSAADSSATNPAATNSPNFPRKNLTSPWAQVVRGADSEPLNNQSSPPHPPPQSSSSSSLDSANLVAAITAVAAIAVDNTNADKNNNNAGNPKKHAWKNASNGVVAEVSPVMGAVSWPALSAKSSAKLTSDSSSAVTEGSVSLPQGPITSNSPRKQATITTNTNANTKSIPPMNHGATSRQKPMKRGGSNNSSNETAPFPMSFSNPPHVSLQDAPPPYPVVQIPNTGFADGVQSYRNNNGWSPRSPVGGYGLPVDEHRNSSRRGNYGNRPHNNSGIRRNQDSGNNVNTRDAHAHQHRMHSGGFLRPTLHNSPSYLGSPSMRPFVNTFEFHEFYYYPTLQFEPFGGMPFLTHAPPPAMFFPVPETPESPAETTSAELPLTSLILKQIEYYFSDVNLVKDDFLKSNMDEQGWVPITLIANFPRVKKLTNNIELILDSMRTSKVVEVHGDKMRRRNELMRCLPSAHQHQLASSGSVSPSGSSCNNIVADFDKITLDEATGHKISNATTNVGSA 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05710 511 MobiDBLite consensus disorder prediction 255 289 - -
Trre5g05710 511 MobiDBLite consensus disorder prediction 1 27 - -
Trre5g05710 511 CDD LAM 383 453 - -
Trre5g05710 511 Pfam La domain 383 438 IPR006630 -
Trre5g05710 511 MobiDBLite consensus disorder prediction 129 202 - -
Trre5g05710 511 SUPERFAMILY "Winged helix" DNA-binding domain 377 460 IPR036390 -
Trre5g05710 511 ProSiteProfiles La-type HTH domain profile. 373 462 IPR006630 -
Trre5g05710 511 PANTHER LUPUS LA PROTEIN-RELATED 115 459 IPR045180 -
Trre5g05710 511 MobiDBLite consensus disorder prediction 184 202 - -
Trre5g05710 511 MobiDBLite consensus disorder prediction 129 177 - -
Trre5g05710 511 MobiDBLite consensus disorder prediction 1 63 - -
Trre5g05710 511 Gene3D - 368 463 IPR036388 -
Trre5g05710 511 MobiDBLite consensus disorder prediction 266 289 - -
Trre5g05710 511 SMART la 377 455 IPR006630 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05710 Trre-Chr5 57144627 57148164 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05710 K18757 - gmx:100775279 424.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05710 5 57144627 57148164 Trre5g05710 5 57144627 57148164 ECH
Trre1g00042 1 324422 328537 Trre5g05710 5 57144627 57148164 PCT