Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05700 ATGTGTACCTTAATGTTATGCTTCATATTATTGGGAGTTGCTTGTATTGTGGCAGCTATAGAACTTCCATCAAATGTTACACTTCCAGCGGTGTTTGTGTTTGGAGATTCTATCATGGATACAGGTAACAACAACAATAACATGAAAACATTGGCTAGGTGCAATTTTCCTCCATATGGAAAAGATTTCAAAGGAGGTGTCCCAACTGGTCGATTTGGCAATGGAAAAGTTCCATCAGACCTTATAGTTGAAATATTGGGCCTTAAGGAACTTCTCCCTGCATATTTGGATCCAAATTTACAGCCTAGCGATCTCATCACCGGCGTTTGCTTTGCATCCGGTGGTTCCGGGTATGATCCTCTCACATCCAAACTTGCGGAAGCTATATCGTTGTCCGGTCAAATAGATTTGTTCAAAGAATACTTAGGAAAGCTAAAAGGACTTGTTGGAGAGGATAGAACAAAATTCATCCTAGCAAATAGTGTTTTCCTTGTGGTTCAAGGAAGCAACGACATTTCCAACACTTATTTTTTGTCTCATGCTAGACAACTACAATATGATGTTCCTGCTTACACTGACCTCATGCTCAACTCTGCTTCCAATTTCTTAAAGGAAATATATGAACTGGGTGCACGAAGAATAGGAGTATTTAGTGCTCCACCAATTGGATGTGTGCCATTTCAGAAAACAATTCTTGGAGGAGTGGAAAGAAAATGTGCTAAAAATTACAACGATGCATCCAAGTTATTTAACACTAAATTGTCAAATGAGCTAGCTTCCCTTAACCACAACTTGCCCAATTCAAGGATGGTTTACCTTGATGTTTACAATCCTCTTCTTGACATCATTGTAAATTATCAAAATTATGGTTATAAAGTTGGAGACAAAGGATGTTGTGGTACAGGTGAAATTGAGGCAGCAGTGTTATGCAACCAATTTGCTTCACCGTGTGAAGATGTTACAGACTATGTTTTCTGGGATAGTTTTCATCCTTCGCAGAGTGTTTACAACAAGCTTGTCGATCCTCTTCTTAAAAAATATATGCACCAATTCTTCTAG 1059 0.3862 MCTLMLCFILLGVACIVAAIELPSNVTLPAVFVFGDSIMDTGNNNNNMKTLARCNFPPYGKDFKGGVPTGRFGNGKVPSDLIVEILGLKELLPAYLDPNLQPSDLITGVCFASGGSGYDPLTSKLAEAISLSGQIDLFKEYLGKLKGLVGEDRTKFILANSVFLVVQGSNDISNTYFLSHARQLQYDVPAYTDLMLNSASNFLKEIYELGARRIGVFSAPPIGCVPFQKTILGGVERKCAKNYNDASKLFNTKLSNELASLNHNLPNSRMVYLDVYNPLLDIIVNYQNYGYKVGDKGCCGTGEIEAAVLCNQFASPCEDVTDYVFWDSFHPSQSVYNKLVDPLLKKYMHQFF 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05700 352 Gene3D SGNH hydrolase 20 348 IPR036514 -
Trre5g05700 352 FunFam GDSL esterase/lipase APG 20 348 - -
Trre5g05700 352 PANTHER GDSL ESTERASE/LIPASE EXL3 11 342 - -
Trre5g05700 352 Pfam GDSL-like Lipase/Acylhydrolase 31 341 IPR001087 GO:0016788
Trre5g05700 352 CDD SGNH_plant_lipase_like 29 347 IPR035669 -
Trre5g05700 352 ProSitePatterns Lipolytic enzymes "G-D-S-L" family, serine active site. 31 42 IPR008265 GO:0006629|GO:0016298
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05700 Trre-Chr5 57070752 57074537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05700 25 345 Pollen Coat Proteome AT1G75910 40.432 4.79e-76 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05700 - - gmx:100793604 581.252