Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05692 ATGGCTGTTCATACAAAATATCGTCTCATTACTTACACACCAGAGATTGTAGATGGGCAGCCTATTTTTGTTTCGTCCAACTGTCTTCCAGCTAAGGCGTTGAAATATGAGCCGGCAGGTCATTCATTTCATTCTGCTGCACTTAAACTTATGGGTGTTAAGGAAGGAAAAGATAACAAAGAGGATAAGAAGAAAGTGGTTGATGATAAGGAACAGGCTTATTTGCCATCTGATTCTTATAGCAGCAAGAGCAAAAAGAAATCTGGAAAAGGAGACAAAGAACAACAGGATCACTATGCATTATTGGGATTGAGCCATCTTAGGTATCTTGCTACAGAAGATCAAATTCGTAAAAGTTACCGTGACTCTGCCTTGAGGTTTCATCCGGACAAACAAGCTGCTCTTCTTCTTGCTGAGGAAACTGAGGCTGCGAAGGAGGCTAAAAAGGTTGAAATTGAAACTCATTTCAAGGCAATCCAGGAGGCATATGAAGTGTTGGTTGATCCCACAAAGAGAAGAATTTATGATTCTACCGATGAGTTTGATGATGAGATTCCCACCGACTGTGCTCCACAAGACTTCTTCAAGGTGTTTGGTCCAGCTTTCATGAGGAATGGGCGGTGGTCAGTTAATCAACCAATTCCATCATTAGGTGATGATAAGACTTCAATAAAGGAAGTTGACAGTTTCTATGATTTTTGGTATTCCTTTAAAAGCTGGAGGGAGTTTCCCCAAGACGAAGAGTTTGATCTTGAGCAAGCTGAGTCTCGAGAGCATAAAAGGTGGATGGAAAGGCAGAATGCAAAACAGTCTGAAAAATCTAGGAAGGAAGAGTATGCACGGATCCGCACTCTTGTTGATAATGCTTATAAGAGGGACCCTAGAATATTGAGAAGAAAGGAAGAGATAAAGGCCGAAAAGAAAAGGAAAAAGGAGTCCAAGTTCATGGCAAAGAAGTTGGAGGAGGAAGAAGCAGCTAGAATTGCTGAAGAGGAGAAAAAACGAAAAGCAGAGGAAGATAGAAAAGCTGCTGAAGTTGCTTCGCAACAGAAAAAGGTGAGGGAGAAAGAGAAAAAGCTCTTGCGGAAGGAGCGGACACGCCTTCGAACTCTCTCAGGACCTATCTCTTCACAACACGTACTTGATATTTCTGAAGACGATGTAGAAGAGCTTTGCATGTCATTTGATATTGATCAGTTGAGGGGTTTGTGCGAGAAAATGGAAGGCAAAGAGGTGTTAGAGCAGGCAGAAGCTCTTAGAGATGCAGTGAATAGCAAGAAACATGCTGTTGATGAGAAAAGTAATCAACAAAATGGCTCTGTCAAGGCTAATGGAAGCAGTATCAGTAGTTCTCTAGCAGGCTACGCAGAGAAGAAGGAGAAACCTTGGACTAAAGAAGAGATCGAGCTATTGAGGAAAGGAGTGCAAAAGTTTCCCAAAGGAACTTCAAGGAGATGGGAGGTTGTTTCAGAATACATTGGCACTGGAAGATCCGTTGAAGAAATAATGAAAGCTACTAAAACCGTTCTCCTCCAGAAGCCCGATACAGCCAAAGCTTTTGACACATTCCTTGAGAAGAGGAAACCTGCTGCACAAATTGCATCTCCACTGTCAACCAGAGAAGAACTGGAAGGGGTATCAATACCAGCAACGACACCTGAAAATAGTGCTGCCATCTCAACAACAGCAACAATACCAACACCGGCAACAACGATAAAAACAGCACCAACACCACCGACGATGACGACAACAACAACAACAACAAACAACATCAGCTCGGAAGAATCTCAAGGAGTTTCAGAACAGGAAGTGTGGTCTGCAGTGCAGGAAAGAGCACTAGTTCAAGCTTTAAAAACCTTTCCAAAGGAAGCTAACCAAAGATGGGAACGAGTATCTGCAGCTGTACCTGGGAAGACTGTGAACCAGTGCAAGAAGAAATTTGCCATGATGAAGGAAAATTTCAGGAACAAGAAAACAGCAGTTTGA 1986 0.425 MAVHTKYRLITYTPEIVDGQPIFVSSNCLPAKALKYEPAGHSFHSAALKLMGVKEGKDNKEDKKKVVDDKEQAYLPSDSYSSKSKKKSGKGDKEQQDHYALLGLSHLRYLATEDQIRKSYRDSALRFHPDKQAALLLAEETEAAKEAKKVEIETHFKAIQEAYEVLVDPTKRRIYDSTDEFDDEIPTDCAPQDFFKVFGPAFMRNGRWSVNQPIPSLGDDKTSIKEVDSFYDFWYSFKSWREFPQDEEFDLEQAESREHKRWMERQNAKQSEKSRKEEYARIRTLVDNAYKRDPRILRRKEEIKAEKKRKKESKFMAKKLEEEEAARIAEEEKKRKAEEDRKAAEVASQQKKVREKEKKLLRKERTRLRTLSGPISSQHVLDISEDDVEELCMSFDIDQLRGLCEKMEGKEVLEQAEALRDAVNSKKHAVDEKSNQQNGSVKANGSSISSSLAGYAEKKEKPWTKEEIELLRKGVQKFPKGTSRRWEVVSEYIGTGRSVEEIMKATKTVLLQKPDTAKAFDTFLEKRKPAAQIASPLSTREELEGVSIPATTPENSAAISTTATIPTPATTIKTAPTPPTMTTTTTTTNNISSEESQGVSEQEVWSAVQERALVQALKTFPKEANQRWERVSAAVPGKTVNQCKKKFAMMKENFRNKKTAV 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05692 661 CDD SANT 605 651 IPR001005 -
Trre5g05692 661 ProSiteProfiles SANT domain profile. 600 655 IPR017884 -
Trre5g05692 661 CDD SANT 462 504 IPR001005 -
Trre5g05692 661 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 1 660 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
Trre5g05692 661 SMART dnaj_3 96 171 IPR001623 -
Trre5g05692 661 ProSiteProfiles Myb-like domain profile. 605 651 IPR001005 -
Trre5g05692 661 Pfam Myb-like DNA-binding domain 461 502 IPR001005 -
Trre5g05692 661 Pfam Myb-like DNA-binding domain 604 649 IPR001005 -
Trre5g05692 661 CDD DnaJ 97 168 IPR001623 -
Trre5g05692 661 Gene3D DnaJ domain 80 189 IPR036869 -
Trre5g05692 661 SUPERFAMILY Chaperone J-domain 94 203 IPR036869 -
Trre5g05692 661 Gene3D - 597 661 - -
Trre5g05692 661 Gene3D - 456 513 - -
Trre5g05692 661 PRINTS DnaJ domain signature 151 171 IPR001623 -
Trre5g05692 661 PRINTS DnaJ domain signature 48 66 IPR001623 -
Trre5g05692 661 PRINTS DnaJ domain signature 120 135 IPR001623 -
Trre5g05692 661 MobiDBLite consensus disorder prediction 424 447 - -
Trre5g05692 661 FunFam Myb family transcription factor 599 659 - -
Trre5g05692 661 MobiDBLite consensus disorder prediction 568 598 - -
Trre5g05692 661 Pfam DnaJ domain 97 176 IPR001623 -
Trre5g05692 661 ProSiteProfiles Myb-like domain profile. 455 510 IPR001005 -
Trre5g05692 661 ProSiteProfiles dnaJ domain profile. 97 179 IPR001623 -
Trre5g05692 661 ProSitePatterns Nt-dnaJ domain signature. 156 175 IPR018253 -
Trre5g05692 661 SUPERFAMILY Homeodomain-like 461 505 IPR009057 -
Trre5g05692 661 Coils Coil 303 366 - -
Trre5g05692 661 SMART sant 601 653 IPR001005 -
Trre5g05692 661 SMART sant 459 512 IPR001005 -
Trre5g05692 661 MobiDBLite consensus disorder prediction 332 357 - -
Trre5g05692 661 SUPERFAMILY Homeodomain-like 603 657 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05692 Trre-Chr5 57005581 57007566 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05692 94 297 C2H2 Transcription Factor Family AT1G74250 26.749 1.99e-15 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre5g05692 DnaJ 4e-17 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05692 K09522 - gmx:100814414 838.565