Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05691 ATGGCTGTTCATACAAAATATCGTCTCATTACTTACTCACAAGAGATTGTAGATGGGCAGCCTATTTTTGTTTCGTCCAACTGTCTTCCGGCTAAGGCGTTGAAATATGAGCCAGCAGGTCATTCTTTTCATTCTGCTGCACTTAAACTTATGGGTGTTAAGGAAGGAAAAGATAACAAAGAGGATAAGAAGAAAGTGGTTGACGATAAGGAACAGGCTTATTTGCCATCTGATTCTTATAGCAGCAAGAGCAAAAAGAAATCTGGAAAAGGAGACAAAGAACAACAGGATCACTATGCATTATTGGGGTTGAGCCATCTTAGGTATCTTGCTACAGAAGATCAAATTCGTAAAAGCTACCGTGACACTGCCTTGAGGTTTCATCCGGACAAACAAGCTGCTCTTCTTCTTGCCGAGGAAACGGAGGTTGCCAAGGAGGCTAAGAGGGTTGAAATAGATACTCATTTCAAGGCAATCCAGAACGCATATGAAGTGTTGGTTGATCCCATAAAGAGAAGAATTTATGATTCTACCGACGAGTTTGATGATGAGATTCCCACCGACTGTGCTCCACAAGATTTCTTCAAGGTGTTTGGTCCAGCTTTTATGAGGAATGGGCGGTGGTCGGTTAATCAACCAATTCCATCATTGGGGGATGATAAGACTTCAATAAAGGAAGTTGACAGTTTCTATGATTTTTGGTATTCCTTTAAAAGCTGGAGGGAGTTTCCTCAGGCTGATGAGTTTGATCTTGAGACAGCTGAGACTCGAGAAGATAAAAGGTGGATGGAAAGGCAGAATGCAAAACTGTCAGAAAAAGCCAGGAAGGAAGAGTATGCACGGATCCGCACTCTTGTTGATAATGCTTATAAGAGGGACCCTAGAATATTGAGAAGAAAGGAGGAGATAAAGGCTGAGAAGAAAAGGAAAAAGGAGTCCAAGTTCTTGGCAAAGAAGTTGGAGGAGGAAGAAGCAGCCAGAATTGCTGAAGAGGAGAAAAAACGAAAAGCAGAGGAAGATAGGAAAGCTGCTGAAGCTGCTTCGCAACAGAAAAAGGTGAGGGAGAAAGAGAAAAAGCTCCTCCGGAAGGAGAGGACACGCCTTCGAACTCTCTCAGGACCTATTGCGTCACAACACATACTTGATATTTCTGCAGACGATGTAGAAGAGATTTGCATGTCATTTGATATTGATCAGTTGAGGGGTTTGTGCGAGAAAATGGAAGGCAAAGAGTTGTTAGAACAAGCCGAAGCTCTTAGAGATGCAGTGAGTGGCAAGAAACATGATGGTGATGAAAAAAGTAATCAGCAAAATGGCCATGTAAAGGCTAATGGAAGCATAAGTTCTCTAGCAAGCTACACAGAGAAGAAGGAGAAACCTTGGACTAAAGAAGAGATCGAGCTATTGAGGAAAGGAGTGCAAAAGTTTCCCAAAGGAACTTCAAGGAGATGGGAGGTTGTTTCAGAATACATTGGCACTGGAAGATCCATTGAAGAAATAATGAAAGCTACTAAAACCGTTCTCCTCCAGAAGCCCGATACAGCCAAAGCTTTTGACACATTCCTTGAGAAGAGGAAACCTGCTGCACAATCAATTGCATCTCCACTGTCAACCAGAGAAGAACTGGAAGGGGTATCAATACCAGCAACGACACCCGAAAATAGTGCTGCCATCTCAACAACAGCAACAATAGCAACACCGGCGACAACAAAAACAATAGCAACACCGGCGACAGCAACAAAAACAATACCAACACCGGCAACGGCGACAAAAACAATACCATCACCAATACCACCACCACCGACGTCAACAACAAACAATAGCAACTTGGAAGAATCTCAAGGAGTTACAGAACAGGAGGTGTGGTCTGCAGTGCAGGAAAGAGCACTAGTTCAAGCTTTAAAAACCTTTCCAAAGGAAGCTAACCAGAGATGGGAACGAGTAGCTGCAGCTGTACCTGGGAAGACTGTGAACCAGTGCAAGAAGAAATTTGCCATGATGAAGGAAAATTTCAGGAACAAGAAAACTGCAGTTTGA 2037 0.4305 MAVHTKYRLITYSQEIVDGQPIFVSSNCLPAKALKYEPAGHSFHSAALKLMGVKEGKDNKEDKKKVVDDKEQAYLPSDSYSSKSKKKSGKGDKEQQDHYALLGLSHLRYLATEDQIRKSYRDTALRFHPDKQAALLLAEETEVAKEAKRVEIDTHFKAIQNAYEVLVDPIKRRIYDSTDEFDDEIPTDCAPQDFFKVFGPAFMRNGRWSVNQPIPSLGDDKTSIKEVDSFYDFWYSFKSWREFPQADEFDLETAETREDKRWMERQNAKLSEKARKEEYARIRTLVDNAYKRDPRILRRKEEIKAEKKRKKESKFLAKKLEEEEAARIAEEEKKRKAEEDRKAAEAASQQKKVREKEKKLLRKERTRLRTLSGPIASQHILDISADDVEEICMSFDIDQLRGLCEKMEGKELLEQAEALRDAVSGKKHDGDEKSNQQNGHVKANGSISSLASYTEKKEKPWTKEEIELLRKGVQKFPKGTSRRWEVVSEYIGTGRSIEEIMKATKTVLLQKPDTAKAFDTFLEKRKPAAQSIASPLSTREELEGVSIPATTPENSAAISTTATIATPATTKTIATPATATKTIPTPATATKTIPSPIPPPPTSTTNNSNLEESQGVTEQEVWSAVQERALVQALKTFPKEANQRWERVAAAVPGKTVNQCKKKFAMMKENFRNKKTAV 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05691 678 MobiDBLite consensus disorder prediction 332 359 - -
Trre5g05691 678 ProSiteProfiles Myb-like domain profile. 622 668 IPR001005 -
Trre5g05691 678 SMART dnaj_3 96 171 IPR001623 -
Trre5g05691 678 MobiDBLite consensus disorder prediction 422 455 - -
Trre5g05691 678 CDD SANT 622 668 IPR001005 -
Trre5g05691 678 SUPERFAMILY Homeodomain-like 459 502 IPR009057 -
Trre5g05691 678 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 1 677 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
Trre5g05691 678 SMART sant 457 510 IPR001005 -
Trre5g05691 678 SMART sant 618 670 IPR001005 -
Trre5g05691 678 PRINTS DnaJ domain signature 48 66 IPR001623 -
Trre5g05691 678 PRINTS DnaJ domain signature 151 171 IPR001623 -
Trre5g05691 678 PRINTS DnaJ domain signature 120 135 IPR001623 -
Trre5g05691 678 ProSiteProfiles SANT domain profile. 617 672 IPR017884 -
Trre5g05691 678 ProSitePatterns Nt-dnaJ domain signature. 156 175 IPR018253 -
Trre5g05691 678 MobiDBLite consensus disorder prediction 422 436 - -
Trre5g05691 678 FunFam Myb family transcription factor 616 676 - -
Trre5g05691 678 MobiDBLite consensus disorder prediction 56 94 - -
Trre5g05691 678 Gene3D - 621 670 - -
Trre5g05691 678 CDD DnaJ 97 168 IPR001623 -
Trre5g05691 678 Gene3D DnaJ domain 80 189 IPR036869 -
Trre5g05691 678 ProSiteProfiles dnaJ domain profile. 97 179 IPR001623 -
Trre5g05691 678 MobiDBLite consensus disorder prediction 579 615 - -
Trre5g05691 678 CDD SANT 460 502 IPR001005 -
Trre5g05691 678 ProSiteProfiles Myb-like domain profile. 453 508 IPR001005 -
Trre5g05691 678 Pfam DnaJ domain 97 176 IPR001623 -
Trre5g05691 678 SUPERFAMILY Chaperone J-domain 94 203 IPR036869 -
Trre5g05691 678 SUPERFAMILY Homeodomain-like 620 674 IPR009057 -
Trre5g05691 678 MobiDBLite consensus disorder prediction 56 72 - -
Trre5g05691 678 Coils Coil 303 366 - -
Trre5g05691 678 MobiDBLite consensus disorder prediction 437 455 - -
Trre5g05691 678 Pfam Myb-like DNA-binding domain 459 500 IPR001005 -
Trre5g05691 678 Pfam Myb-like DNA-binding domain 621 666 IPR001005 -
Trre5g05691 678 Gene3D - 453 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05691 Trre-Chr5 56998362 57000398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05691 94 297 C2H2 Transcription Factor Family AT1G74250 28.049 1.36e-16 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre5g05691 DnaJ 4.3e-16 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05691 K09522 - gmx:100814414 827.394