Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05671 ATGTCGATTCCAACCGAGGATCAAATTCAACATTTCTCTCAACTCAATTTCAACCTAATGCATTCTCCTCCTCCTTCTTCTAACCCTTCTCCGTTTACTGTTATGCATCCCTTGAGTCAGAAAAATGAAATCAATAATGCCAACTTGCACACTAGTAGCAATGTTGAAGCATTTCCCGGTCAGAGTAACAACATAGTTAATCTTCCTCCTCCTCTTCAAACTGAGCCCGTCCAAAGAGGAAAGAATAATAGTAAATCAAAAGTTGCAAGAAATGGAAAATCCGCGGCTCAGAATTCAAATACAGAACCTCTGAATTCAACTGCAGTTAATAACTGTCGTTATGACAGTTCCTTAGGGTTGTTAACCAAGAAATTTGTCAGCTTGATCCAAGATGCCAAGGATGGTACGCTTGATCTAAATAAAACTGCTGAGGTCTTAGAGGTTCAAAAACGGAGAATTTATGACATTACAAATGTTCTTGAAGGAATCGGATTGATAGAAAAAACTTCAAAGAACCATATACGGTGGAAGGGATGTGATGGACTTGGGCCGCGAGAACTGGAGGATCAAGTTAATGCTCTACAGGCTGAAGTTGAAAGTTTATATGCCGAGGAATGCAAACTTGAGGAGTGTATAAGCGAAAGGAAGGAGCTTATAAGAAAGCTGGAGGAAGGTAAAAACACCGGAAAGTACCTTTTTTTTACCGAGGAAGATATTCTTACCCTTCCATGCTTCCAGAATAAGCAACTTATTGCAATCAAGGCTCCAAAAGCTAGTTTCATTGAGGTCCCCGATCCCGATGAGGAATTAGGCTTCCACCAAAGGCAGTACAGGATGATTGTTAGAAGTGCAACTGGACCGATAAATTTGTACCTCTTGAACAAGCGCGACAGCAAGTTTGAAGGTGTGAATGTCAAGCAGTCAAAGTTAGAAGATCCATCGTGCAGTAGCAACCACTGCAGAATGGAGGGTGTGGGACTATTAGAAGGCCAAGGTTTTCAGAAAAACCCTTCCGAGAGTTCAAGTTTGCTTGGCTCAGAGGCTTTTGGAATTCAACAAATTACTCCTACAGATTTGGATGTTGATGGTGACTATTGGTTTCAATCAGATCCCCAAGTTGGCCTTACAGAATTGTGGGGCACAAGTGCAGTTGGCTCAGATAGACAAACTTCTTAG 1176 0.415 MSIPTEDQIQHFSQLNFNLMHSPPPSSNPSPFTVMHPLSQKNEINNANLHTSSNVEAFPGQSNNIVNLPPPLQTEPVQRGKNNSKSKVARNGKSAAQNSNTEPLNSTAVNNCRYDSSLGLLTKKFVSLIQDAKDGTLDLNKTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGCDGLGPRELEDQVNALQAEVESLYAEECKLEECISERKELIRKLEEGKNTGKYLFFTEEDILTLPCFQNKQLIAIKAPKASFIEVPDPDEELGFHQRQYRMIVRSATGPINLYLLNKRDSKFEGVNVKQSKLEDPSCSSNHCRMEGVGLLEGQGFQKNPSESSSLLGSEAFGIQQITPTDLDVDGDYWFQSDPQVGLTELWGTSAVGSDRQTS 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05671 391 Pfam E2F/DP family winged-helix DNA-binding domain 115 178 IPR003316 GO:0005667|GO:0006355
Trre5g05671 391 SUPERFAMILY "Winged helix" DNA-binding domain 113 176 IPR036390 -
Trre5g05671 391 PANTHER TRANSCRIPTION FACTOR E2F 63 384 IPR015633 GO:0000978|GO:0006357
Trre5g05671 391 MobiDBLite consensus disorder prediction 17 36 - -
Trre5g05671 391 MobiDBLite consensus disorder prediction 53 106 - -
Trre5g05671 391 Gene3D - 108 180 IPR036388 -
Trre5g05671 391 SUPERFAMILY E2F-DP heterodimerization region 189 295 IPR037241 -
Trre5g05671 391 Gene3D - 185 296 - -
Trre5g05671 391 Coils Coil 184 204 - -
Trre5g05671 391 FunFam E2F transcription factor 1 107 180 - -
Trre5g05671 391 Coils Coil 208 228 - -
Trre5g05671 391 CDD E2F_DD 189 296 IPR032198 GO:0046983
Trre5g05671 391 Pfam E2F transcription factor CC-MB domain 194 293 IPR032198 GO:0046983
Trre5g05671 391 SMART E2F_TDP_2 113 178 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05671 Trre-Chr5 56780573 56784116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05671 60 379 E2F-DP Transcription Factor Family AT1G47870 50.000 5.63e-95 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Trre5g05671 E2F_CC-MB 8.5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05671 K06620 - gmx:100797301 472.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05671 5 56780573 56784116 Trre5g05671 5 56780573 56784116 ECH