Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05660 ATGGACCGGCGCTGGCCGTGGAAGAAAAAATCGACTGATAAGGTTGTGGTTGAGAAAACAGCTGCTTCACTAGACTCTGCAGATGCTTCCAATCAGGATAATGGCAAGAAACAGAATTATGTCCAAATCTCTGTGGAATCCTATTCACATCTGACTGGTTTGGAGGATCAAGTGAAGACATATGAGGAAAAATTGAAGACATATGATGAACAAGTTCAGACATATGAGGAAAAAGTGAAGACATATGACGAACAAGTTCAGAATTATGAGGAAAAAGTGAAGACACTTGAAGATGAGATCAAGGAAATGAATGAAAAGCTTTCAGTAGCAAACTCTGAGATTAATACTAAGGAAAGCGTGGTAAAGCAACATGCTAAAGTAGCTGAAGAAGCTGTCTCAGGATGGGAAAAGGCTGAAGCTGAGGCTTTGGCATTGAAAGAGCATCTAGAATCGGTCACTCTTTCTAAACTCACTGCTGAGGACCGTGCATCACATTTAGATGGTGCTCTTAAAGAGTGCATGCGACAAATACGGAACCTTAAGGAAGAACATGAACAGAAAATACAGGAAGTTGCTCTGTCGAAAACCAAGCAATTGGACAAGATTAAGGGGGAGCTTGAGGCTAAGATATCTAGCTTTGAACAGGATCTCCTGAGGTCTGCTGCGGAAAACAGGGCGCTGTCAAGGTCCTTGCAGGAACGCTCTAACATGCTAATCCAATTAAGCGAACAAAAAGCTAGTGCTGATGCTGAAATTGAGCATCTTAAGAGCAACGTGGAATCATGCGAAAGAGAAATTAATTCACTTAAATATGAACTTCATGTTGCTTCCAAAGAGCTTGAAATTCGCAACGAGGAAAAAAACATGAGTATGAGGTCTGCAGAAGCTGCTAACAAGCAGCATATGGAGGGTGTGAAAAAGATTACCAAGTTGGAAGCTGAGTGCCAACGACTACGCGGACTAGTTCGCAAAAAGTTACCTGGTCCTGCTGCACTTGCACAAATGAAGCTAGAAGTTGAAAATCTTGGCCGAGATTACGGAGAAAGTCGATTAAGGAAATCACCAGTAAAGGCTCCTGCCCCTAATTTGTCCCCGTTACCTGAGTTCTCCCTAGAGAATGTACAGAATTTCCAGAAGGAGAATGAATTTCTCACAGAGCGTTTATTGGCAATGGAAGAAGAAACCAAAATGCTGAAAGAAGCATTGGCTAAACGCAACAGTGAATTGCAGGCCTCAAGGAGTACATGTGCTAAAACACTGAGCAAACTTCAAAGTTTGGAAGCACAACTTCAGACAAGTAACCAGCTGATTGGATCTCCGAAATCCACGATGCATATAACCCATGAAGGCATTTATAGTCAAAATGCAAGCATTGCACCTAGCTTAGTTTCCATGTCTGAAGACGGAAATGATGATGCAGCAAGTTGTGCCGAGTCTTGGTCTACAACAATAGCATCTGGGCTATCCCAAGTTTCTAAAAAGTGTACTGAGGCATCAAGCAAAGCCGAAGCCATTCAAAAGTTGGAGCTAATGGACGACTTTCTGGAGGTGGAGAAGTTAGCTCGTTTGTCAATTGATTCCAACATAGATGCCACAGTTTCATCGTCTTCAAATAATAATGCAACTGATGGTGTGACCAATGACGTATCAAAAGTCAGTACTGGCACAATTGGTCTGTCTGAAACAAATGGCGATTCAAATCCTTTGGCAAATCAAGTGTCTTCCGGTGCTTTGACAACACCTGTTCCCCAGTCTGATGTTGGTGGCTTATTAACAGAACTTAGATCAAGAATATTACTGGTTTTTGAGTCCATTGCTAACGATGCTGACATAGGGAAGATCGTTGAGGATATTAAGCATGTACTAGAAGATTCACATGACACAGCTATTCACCCCTCTGAAGGTTTCATTTCCCAAGATGGAAAACCTTCTGATGCCACATGTGATAGGCAGAAAAATCCTGAAGATGCTGGATTAAACCTTGATGAGGAAACCATTTCATCCCTGCAACCCAAAGAGTATGTGCAGATAACTTCAGATTTAGAAGCTGCAATTTCTCATATTCATGACTTCGTATTGTTACTAGGCAAAGAGGCAATTTCATTTCATGACGTTTCTTCTAACGGAAATGAAATGAGCCAAAAGATTGAGGAGTTTTCTGTCACCTTTAGTAAAGTTTTATGCAGCAATGCAAGTCTGCTACAGTTTGTTCTTGACCTGTCTTACGTTGTGGCTAAAGCAAGTGAACTCAGATTTGGTGTCCTTGGATACAAGGGTTCAGAAGCTGAAACTAACAGTCTCGATTGCATAGATAAAATTGCTTTGCCTGAAAATAAGTTAGTTCAAGACAATTCATCTGGAGAAAGATATCAAAATGGTTGTTCCCGTGTTCTTAATCCAAGTTCTGATCCTGAGGTTCCTGATGATGGAAATTTGGTTTCGGGCTATAGAGCGATTGTGGCATCACAAAAACCGTCATTCGAGGAATTTGAAAAACTGAAACTAGAGAAAGAGAAAGTAGCAACAGATCTGTCAACATGTACCGAGAATCTCGAATTGACCAAGTCTCAATTGGTAGAAACTGAGCACCTTCTAGCAGAAGTTAAATCACAGTTGGCTTCTGCTGAAAGATCAAATAGCTTGGCTGAGACGCAGCTAAAGTGTATGGCAGAGTCTTACAAGTCACTTGAAACACGTGCCCAAGAGTTCGAAACTGAGCTGAACCGTTTGAAAAGTACGATAGAAACTCTGGAGAATGAACTTCACGATGAAAAGAAGGCTCATGAAGCTGCTTTAGTGAAGAGCAAGGAGCTAGAAGAGCAGTTACTAAGGATTGAGAGCTTAACCGCTGAAAACGAAGTCAAATCTACACAGGAGAAAGATTTGGCAGCAGCTGCCGAAAAGCTAGCCGAGTGTCAAGAAACCATATTCCTTTTGGGAAAGCAGTTAAATGCTATACATCCTCAAAGTCAACCAATTGAGTCTCCTTACAACAACACAAGTCCAAATACTACTAGTAGCCCAAATCTTCAAGAAGTAGGTCAGTTGGAGATGGACACTGCCACTTCTTCTTTTGTGCAAAGACTGAGTTCGGATTCGCCCTTGCATTTTTCCAATGGTTTATTTGTCCCATCAGATAATGATTCAAATGTTCCGGCCAGATCTCCGGCACCGCTTCCAAAATCAAAACCAAAACACAGGCCTACCAAGTCAGCCTCTTCAACTTCTTCCGTCACTACACCGGAGAAACAACGGGGATTTAGTAGATTCTTTTCATCAAAAGGGAAGCCTGGTTATTGA 3300 0.417 MDRRWPWKKKSTDKVVVEKTAASLDSADASNQDNGKKQNYVQISVESYSHLTGLEDQVKTYEEKLKTYDEQVQTYEEKVKTYDEQVQNYEEKVKTLEDEIKEMNEKLSVANSEINTKESVVKQHAKVAEEAVSGWEKAEAEALALKEHLESVTLSKLTAEDRASHLDGALKECMRQIRNLKEEHEQKIQEVALSKTKQLDKIKGELEAKISSFEQDLLRSAAENRALSRSLQERSNMLIQLSEQKASADAEIEHLKSNVESCEREINSLKYELHVASKELEIRNEEKNMSMRSAEAANKQHMEGVKKITKLEAECQRLRGLVRKKLPGPAALAQMKLEVENLGRDYGESRLRKSPVKAPAPNLSPLPEFSLENVQNFQKENEFLTERLLAMEEETKMLKEALAKRNSELQASRSTCAKTLSKLQSLEAQLQTSNQLIGSPKSTMHITHEGIYSQNASIAPSLVSMSEDGNDDAASCAESWSTTIASGLSQVSKKCTEASSKAEAIQKLELMDDFLEVEKLARLSIDSNIDATVSSSSNNNATDGVTNDVSKVSTGTIGLSETNGDSNPLANQVSSGALTTPVPQSDVGGLLTELRSRILLVFESIANDADIGKIVEDIKHVLEDSHDTAIHPSEGFISQDGKPSDATCDRQKNPEDAGLNLDEETISSLQPKEYVQITSDLEAAISHIHDFVLLLGKEAISFHDVSSNGNEMSQKIEEFSVTFSKVLCSNASLLQFVLDLSYVVAKASELRFGVLGYKGSEAETNSLDCIDKIALPENKLVQDNSSGERYQNGCSRVLNPSSDPEVPDDGNLVSGYRAIVASQKPSFEEFEKLKLEKEKVATDLSTCTENLELTKSQLVETEHLLAEVKSQLASAERSNSLAETQLKCMAESYKSLETRAQEFETELNRLKSTIETLENELHDEKKAHEAALVKSKELEEQLLRIESLTAENEVKSTQEKDLAAAAEKLAECQETIFLLGKQLNAIHPQSQPIESPYNNTSPNTTSSPNLQEVGQLEMDTATSSFVQRLSSDSPLHFSNGLFVPSDNDSNVPARSPAPLPKSKPKHRPTKSASSTSSVTTPEKQRGFSRFFSSKGKPGY 1099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05660 1099 Coils Coil 374 401 - -
Trre5g05660 1099 Gene3D - 38 136 - -
Trre5g05660 1099 MobiDBLite consensus disorder prediction 1040 1099 - -
Trre5g05660 1099 SUPERFAMILY Tropomyosin 829 993 - -
Trre5g05660 1099 MobiDBLite consensus disorder prediction 989 1010 - -
Trre5g05660 1099 Coils Coil 238 297 - -
Trre5g05660 1099 MobiDBLite consensus disorder prediction 556 580 - -
Trre5g05660 1099 Coils Coil 955 975 - -
Trre5g05660 1099 Coils Coil 858 941 - -
Trre5g05660 1099 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 1 1094 - -
Trre5g05660 1099 Coils Coil 51 120 - -
Trre5g05660 1099 Coils Coil 163 197 - -
Trre5g05660 1099 SUPERFAMILY Tropomyosin 48 286 - -
Trre5g05660 1099 MobiDBLite consensus disorder prediction 1069 1087 - -
Trre5g05660 1099 MobiDBLite consensus disorder prediction 630 657 - -
Trre5g05660 1099 Pfam Filament-like plant protein, long coiled-coil 117 991 IPR008587 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05660 Trre-Chr5 56679984 56684015 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05660 - - gmx:100782834 1532.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05660 5 56679984 56684015 Trre5g05660 5 56679984 56684015 ECH
Trre1g00097 1 639472 643718 Trre5g05660 5 56679984 56684015 PCT