Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05655 ATGACTACTCTTTCACTTTTCCCACTTCTTCTTCTTCCTCTCATTATTATTATAACAATAACCTTGACCATTCCTTCTCCGGCTGAAGCCGTAGGAGGACAATGGCAGCTCTTACAAAATAACATCGGCGTTGTAGGTATGCACATGCAGTTACTCCACAATGATCGTGTGGTCATTTTCGACCGCACGGATTTTGGATTATCAAACTTATCCTTATCCAACGGTAAATGCCGTAATAACCCACAAGAACAGGTGGTTAAAACCGATTGTACTGCTCACTCCCTTGAATACGATGTTGTTTCCAACACATTTCGGCCTCTCTTTATACAAACCAATGTTTGGTGTTCCTCCGGTTCTGTCTCTCCGAACGGTACTCTTATCCAAACTGGAGGTTTCAACGATGGAGACCGTACCGTTAGAACCTTCAATCCATGTTCAAATTGTGATTGGCAAGAATTTAATACTGGCCTCGCAGCTCGAAGATGGTATGCCACCAATCACATGCTACCAGATGGAAGGCAAATTATTATTGGTGGAAGAAGACAATTCAACTATGAATTTTATCCAAAGAAAGATGCCACAGCAAAAAACATATATAGTCTACCTTTTCTTGTACAAACAAATGATGCTGGAGCTGAGAACAATCTTTACCCTTTTGTTTTTCTCAATGTAGATGGAAATCTTTTCATCTTTGCAAATAATCGTGCTATTTTGTTTGATTACAACAGCAACAAAGTTGTTAAAACATACCCTTCAATACCAGGTGGAGATCCTAGGAATTATCCTAGTACAGGTTCTGCTGTTCTGCTTCCTTTAAGAAACTTACAAAACCCATCGGTTGAAGCTGAAGTAATGATTTGTGGCGGAGCTCCAAAAGGTTCGTTTCAAAAAACATTGCAGGGAAGTTTTATCGGAGCACTGAATACATGTGCTCGGATAAAAATAACTGACCCGAATCCGAATTGGGTCATGGAAACGATGCCAGGTGGAAGAGTCATGAGTGACATGCTTTTGCTTCCTAATGGCGACGTTTTGTTAATTAATGGGGCAGCTATGGGGTCCGCTGGTTGGGAATCAGGTCGAAACCCGATTTTAAATCCGTTTCTTTATAAACCGAATGGTGTTATCGGTTCGAGATTTCAATTACAAAAGCCGTCTAGTATTCCTCGAATGTACCATTCTACAGCCGTTTTGCTTCGTGATGGTAGGGTCCTTGTTGCCGGTAGCAATCCTCACATTGATTATAAATTTGGAAATGTTTTGTTTCCGACAGAATTGCGTTTAGAAGCCTTTTCACCTTCTTATTTAGAAGCTGGATCCGATGATTTACGTCCTACATTGGTGTTTCCTGCACCTCAATCACAAACAAAATTGAAGTATGGTCAAAAATTAAAGGTGCGGTTTCAAGTTAAGGCAGAATTGGTGAAAAATTTAGTGTCGGTGACAATGTTAGCGCCGTCTTTTAATACGCATTCTTTCTCCATGAATCAGAGGTTGTTAGTCCTTGATGAAGTGAAACCAACAAACAAAGTGAGTAGTAAAATTGTTGTTGGAAAATCAGCATTGGTGTACCAAGTTGAAGTGACAATACCTAGTTCACCCATTCTTGCACCTCCTGGTTACTATTTACTATTTGTGGTCCATCAAGAAATTCCAAGTCAGGGTGTTTGGGTCCAGTTACTATAA 1686 0.4021 MTTLSLFPLLLLPLIIIITITLTIPSPAEAVGGQWQLLQNNIGVVGMHMQLLHNDRVVIFDRTDFGLSNLSLSNGKCRNNPQEQVVKTDCTAHSLEYDVVSNTFRPLFIQTNVWCSSGSVSPNGTLIQTGGFNDGDRTVRTFNPCSNCDWQEFNTGLAARRWYATNHMLPDGRQIIIGGRRQFNYEFYPKKDATAKNIYSLPFLVQTNDAGAENNLYPFVFLNVDGNLFIFANNRAILFDYNSNKVVKTYPSIPGGDPRNYPSTGSAVLLPLRNLQNPSVEAEVMICGGAPKGSFQKTLQGSFIGALNTCARIKITDPNPNWVMETMPGGRVMSDMLLLPNGDVLLINGAAMGSAGWESGRNPILNPFLYKPNGVIGSRFQLQKPSSIPRMYHSTAVLLRDGRVLVAGSNPHIDYKFGNVLFPTELRLEAFSPSYLEAGSDDLRPTLVFPAPQSQTKLKYGQKLKVRFQVKAELVKNLVSVTMLAPSFNTHSFSMNQRLLVLDEVKPTNKVSSKIVVGKSALVYQVEVTIPSSPILAPPGYYLLFVVHQEIPSQGVWVQLL 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05655 561 Gene3D Immunoglobulins 444 561 IPR013783 -
Trre5g05655 561 SUPERFAMILY Galactose oxidase, central domain 96 437 IPR011043 -
Trre5g05655 561 Pfam Glyoxal oxidase N-terminus 47 289 IPR009880 -
Trre5g05655 561 Pfam Galactose oxidase-like, Early set domain 455 559 IPR015202 -
Trre5g05655 561 SUPERFAMILY E set domains 441 560 IPR014756 -
Trre5g05655 561 CDD E_set_GO_C 439 560 IPR015202 -
Trre5g05655 561 Gene3D - 30 443 IPR037293 -
Trre5g05655 561 FunFam Aldehyde oxidase GLOX 29 441 - -
Trre5g05655 561 PANTHER SECRETED PROTEIN-RELATED 26 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05655 Trre-Chr5 56644448 56646362 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05655 - - gmx:100816842 830.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05655 5 56644448 56646362 Trre5g05655 5 56644448 56646362 ECH
Trre5g05655 5 56644448 56646362 Trre1g00122 1 881150 883549 PCT