Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05653 ATGGCTGAAGAAATTTCCCAAAACGACGTCGCTTCATCTTCCAAATCTAAAAGCTTCTGGTCTGCACTCCGTTGGGTTCCCACTTCCACCGATCACATCATCGCCGCCGAGAAACGCCTTCTCTCCATTCTCAAGACTGGGTATGTTCAAGAGCGTGTTAATATAGGTTCTGGTCCTCCTGGGTCGAAAGTAAGATGGTTCCGTTCATCGAGTGATGAGCCACGGTTTCTCAACACTGTTACTTTTGACAGTAAACCTGATGCTCCTACGCTTGTCATGGTTCATGGATATGCTGCTTCACAGGGTTTCTTCTTTCGCAATTTTGACACTCTAGCCTCTCGTTTCAGAATCATTGCTGTTGATCAACTTGGTTGGGGAGGATCAAGCAGGCCTGATTTCACATGCAGAAGTACTGAAGAAACTGAGGCATGGTTCATTGATTCTTTTGAGGAATGGAGAAAAGCCAAAAATCTGAGCAATTTCATACTACTTGGACATTCTTTTGGTGGTTATGTTGCTTCCAAATATGCGCTCAAGCACCCTGAGCATGTACAACACTTAATTTTAGTGGGACCTGCTGGGTTTACATCAGAAACAGATCCAAAGACTGAGTTTGTTACAAAGTTTCGAGCAACATGGAAGGGAGCAGTTTTGAACCATCTATGGGAATCTAATTTTACACCTCAAAAAATTGTCAGAGGTTTTGGTCCTTGGGGTCCTAACATGGTCCGCAAATATACAAGTGTTAGGTTTGGTACACATTCAACGGGGCAAAAACTGACTGAAGAGGAATCAAGTTTGCTAACAGATTATGTTTATCATACATTGGCGGCCAAAGCTAGTGGAGAGCTGTGTTTAAAATATATTTTTGCATTTGGAGCCTTTCCTAGGATGCCCCTTCTTCACAGTGCTCCAGAGTGGAAGGTGCCCACCACATTCATATATGGTACTGAAGATTGGATGAATTATGAAGGTGCCCAAGAAGCTCGCAAGCATATGAAGGTTCCGTGTGAAATTATCAGGGTCCCTCAGGCCGGACATTTTGTGTTCATCGACAACCCAAGTGGCTTCCATTCAGCTGTGTTATATGCTTGTCGAAGGTTTCTTACACCAAATCCAGACAATGAATCTTTTCCTGAAGGGCTATCCTCTGCGTAG 1158 0.4378 MAEEISQNDVASSSKSKSFWSALRWVPTSTDHIIAAEKRLLSILKTGYVQERVNIGSGPPGSKVRWFRSSSDEPRFLNTVTFDSKPDAPTLVMVHGYAASQGFFFRNFDTLASRFRIIAVDQLGWGGSSRPDFTCRSTEETEAWFIDSFEEWRKAKNLSNFILLGHSFGGYVASKYALKHPEHVQHLILVGPAGFTSETDPKTEFVTKFRATWKGAVLNHLWESNFTPQKIVRGFGPWGPNMVRKYTSVRFGTHSTGQKLTEEESSLLTDYVYHTLAAKASGELCLKYIFAFGAFPRMPLLHSAPEWKVPTTFIYGTEDWMNYEGAQEARKHMKVPCEIIRVPQAGHFVFIDNPSGFHSAVLYACRRFLTPNPDNESFPEGLSSA 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05653 385 SUPERFAMILY alpha/beta-Hydrolases 80 362 IPR029058 -
Trre5g05653 385 Pfam alpha/beta hydrolase fold 89 354 IPR000073 -
Trre5g05653 385 FunFam Probable 1-acylglycerol-3-phosphate O-acyltransferase 75 365 - -
Trre5g05653 385 Gene3D alpha/beta hydrolase 76 365 IPR029058 -
Trre5g05653 385 PRINTS Alpha/beta hydrolase fold signature 163 176 IPR000073 -
Trre5g05653 385 PRINTS Alpha/beta hydrolase fold signature 114 129 IPR000073 -
Trre5g05653 385 PRINTS Alpha/beta hydrolase fold signature 177 190 IPR000073 -
Trre5g05653 385 PRINTS Epoxide hydrolase signature 309 325 IPR000639 GO:0003824
Trre5g05653 385 PRINTS Epoxide hydrolase signature 163 176 IPR000639 GO:0003824
Trre5g05653 385 PRINTS Epoxide hydrolase signature 177 190 IPR000639 GO:0003824
Trre5g05653 385 PRINTS Epoxide hydrolase signature 342 364 IPR000639 GO:0003824
Trre5g05653 385 PRINTS Epoxide hydrolase signature 114 129 IPR000639 GO:0003824
Trre5g05653 385 PANTHER RE40534P-RELATED 22 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05653 Trre-Chr5 56608023 56612866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05653 69 192 Acyl Lipid Metabolism Gene Families AT1G64670 31.579 1.97e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05653 - - gmx:100791981 698.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05653 5 56608023 56612866 Trre5g05653 5 56608023 56612866 ECH
Trre1g00127 1 935542 939010 Trre5g05653 5 56608023 56612866 PCT