Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05652 ATGCTCCCAACAACGGCTATATTTCTCACCTTCATTGCATCACTCACCATCACCACATTCACCTTAACACATGCAACACAACCACAAAACAACTCATCTCACTCTGAAATCCAAGCCTTACTAACCTTCAAACAAAACCTTCTAGACCCACTTAACTCATTAACTTCCTGGGATCCATCAACACCATCAGCACCATGTGACTGGCATGGAATTCTCTGTTACAACAACAATAACAGAGTCCACACTATACGCTTACCTCGTCTTCAACTCACTGGTTCACTCACTCCATCACTCTCTAATCTCTCACAGCTTCGAAAACTAAGTCTTCATTCCAACAACCTTAACTCTTCAATACCTTCTTCTCTTTCTCACTGTCTCTTCCTCCGTGCTGTTTATCTTCACAACAACTCTCTCTCCGGTAACCTTCCATCTTCACTTCTCAACCTCACCAACCTTCAAATTCTCAACCTTGCTCGTAACTTTCTCTCTGGTACTATCCCAAACCATCTCTCTAACTCTCTACAGTTCCTTGACTTGTCCTCTAACTCATTCTCCGGCGACATTCCGGGGAACTTTTCATCGAAATCACAGCTTCAACTCATCAACCTCTCACATAACAGTTTCACCGGTGGAATACCGGTTACTGTTGGAGCATTACAGCATTTGGAGTATCTTTGGTTAGACAATAATCATCTTCATGGAACGTTACCTTCTGCTGTTGCTAACTGTTCCTCTATGGTGCACCTTAGCGCAGAGGATAATTTCATTGGTGGGTTGATTCCTTCAACTGTAGGGACTATGCCAAAGCTTCAAGTGTTGTCACTTTCAATGAATCAACTTTCTGGTTTTGTCCCCACTTCACTGTTTTGCAATAATAACACCAATCTTAGAAATGTTCAACTTGGTTTTAATAGAATCACGGGTATTTCAAATCCAAAAAATGGAAAATGTGTTAATGATTTTTTGGAGTTTTTAGACCTTAAAGAGAATCACATTATTCACAATTTGTTTCCATTATGGTTGACCAATGTGAAATCTTTGAGGACTATTGATCTATCTGGAAACTCATTTTCAGGTTCTCTTCCTCAAGAAATTGGAAATCTTTTCTTGTTAGAAGAGTTGAAGCTTTCTGATAATTTGTTATCTGGTGTTGTTCCAAGTAGCATTGTGAAATGTAGGTTGTTGAAGATTCTTAATCTTCAAAGGAATCGATTTTCCGGTCTCATTCCTTATTTTCTTGGAGAGTTGACAAATCTGAAGGAGTTATCTCTTGGTGGTAACTTTTTTACTGGTTTAATTCCAAAGAGTTATGGAACTCTTCATGAGTTAGAGATTTTGGATTTAAGCAGCAACAAACTCAATGGGATTTTGCCCTTGGAGATCATGCAGTTAGGTAACATGAGTGTTTTGAATCTCAGCAACAATAGATTCTCCGGTCAAGTTTCGTCTCGAATTGGAGACTTGATGGCTTTGCAGGTTCTTAATTTGAGTCAATGTGGGTTTTCTGGTAGTGTACCAGCTACATTGGGGAATTTGATGAAACTGAGAGTGTTGGATTTAAGCAAACAAAGTCTTTCAGGTGAGTTACCTGTTGAGGTTTTCGGATTACCGAGTTTGGAAGTCGTGGCACTTGATGGAAACCGTTTGAGTGGTTCTGTTCCCGAGGGTTTCAGCAGCATTGTTAGTCTAAGGTATCTTAATCTTAGTTCTAATGCTTTTGTTGGTAACATTCCATCAACTTATGGTTTTATAAGTTCCTTAGTTGTTCTTTCTTTGTCTCACAATTTCATTTCTGGTTCAATACCTAATGAGATTGGTGGTTGTTCTCAACTTGAAGTGCTTCAGCTTCGATCAAATCATTTAGTAGGTAACATTGTTCCAAGTGTTATCTCTCAGCTTTCACGTTTAAAAGAGCTTAATTTGGGACAAAATGGATTCAAAGGTGATATCCCAGATGGGATATCAAAGTGTTCATCTTTGAATTTACTTTCTTTGGATGGTAATCACTTAACTGGTCACATACCACAATCCTTGTCAAAACTATCAAGTTTGAAATGGTTGAATCTCTCTTCAAATCAATTGACAGGAGAAATTCCTGTTGATCTTTCGCGCATTTCAGGTTTGAAGTATTTAAATGTTTCCAACAACAATCTAGAGGGAGAGATTCCAGAATTGTTGAGTTCTAAGTTCAATGACCCTTCTGTGTATGCAATGAACAAGAAGTTATGTGGGAAACCATTGCATAAAGAATGCGGAAAATTGAAAAGACGGAAGAGAAAAAAGCTAATCATCATCATAAGTGTTGCAGCTGCAGGACTATGTCTTTTAGCATTGTGTTGCTGTGGCTATGTTTATAGTCTCTTAAGATGGCGAAGAAAGCTTCGAGAAGGAGTAACAGGCGAGAAGAAACGTAGTCCAACAAGTGCAGGCTCAAATGGAGAAAGAAACAGCAGAGGAAGTGGTGAAAATGGAGGACCAAAACTCATAGTTTTCAACAACAAAATCACCTATGCAGAGACACTAGAAGCAACAAGAAACTTCGATGAAGAAAACGTTTTAAGCCGAGGAAAACATGGACTTGTTTTCAAAGCCTCATATCAAGATGGAATGGTTCTATCAATTCGTAGACTTCCAAACGGAGCAACATTGATTGATGAAACCACATTCCGCAAAGAAGCAGAATCATTAGGTAAAGTTAAGCATCGAAACTTAACCGTTTTACGTGGCTATTATCCAGGACCACCACCTGATGTAAGACTACTAGTCTATGATTACATGCCAAATGGAAATTTAGGTACATTGCTTCAAGAAGCTTCACAACAAGACGGTCATGTTTTGAATTGGCCAATGCGTCATTTAATTGCATTGGGTATTGCTCGCGGATTGGGTTATTTACACTCGGTGGAAATTGTTCATGGTGATGTTAAGCCACAAAATGTTCTTTTTGATGCTGATTTTGAAGCCCATTTATCTGAATTCGGGTTAGACCGGTTAACAATGGTTAATGTCCCCGGCCCAATAGAATCCGCAGCATCATCGTCATCATTGACAACAACGCCAGTTGGTTCATTGGGCTACGTGGCACCCGAAGCGGTGCTAACCGGACAAGTTACAAAAGAAGGAGATATATACAGTTTTGGGATAGTTTTGTTGGAGATATTGACAGGAAGAAAAGCTGTGATGTTTACACAAGATGAAGATATAGTGAAATGGGTGAAGAAACAGTTACAAAAAGGTTTGATTTCTGAGTTATTGGAACCTGGTTTACTTGAGATTGATCAAGAATCATCAGAATGGGAAGAGTTTTTGTTAGGTGTTAAAGTAGCACTTCTTTGCACAGCACATGATCCTCTTGATAGACCTTCTATTAATGATATTGTTTTCATGCTTGAAGGTTGTCGTGTTGGACCTGATATCCCTTCTTCTGCTGATCCAACCACACTACCTTCTCCTGTTTCTTGA 3462 0.3908 MLPTTAIFLTFIASLTITTFTLTHATQPQNNSSHSEIQALLTFKQNLLDPLNSLTSWDPSTPSAPCDWHGILCYNNNNRVHTIRLPRLQLTGSLTPSLSNLSQLRKLSLHSNNLNSSIPSSLSHCLFLRAVYLHNNSLSGNLPSSLLNLTNLQILNLARNFLSGTIPNHLSNSLQFLDLSSNSFSGDIPGNFSSKSQLQLINLSHNSFTGGIPVTVGALQHLEYLWLDNNHLHGTLPSAVANCSSMVHLSAEDNFIGGLIPSTVGTMPKLQVLSLSMNQLSGFVPTSLFCNNNTNLRNVQLGFNRITGISNPKNGKCVNDFLEFLDLKENHIIHNLFPLWLTNVKSLRTIDLSGNSFSGSLPQEIGNLFLLEELKLSDNLLSGVVPSSIVKCRLLKILNLQRNRFSGLIPYFLGELTNLKELSLGGNFFTGLIPKSYGTLHELEILDLSSNKLNGILPLEIMQLGNMSVLNLSNNRFSGQVSSRIGDLMALQVLNLSQCGFSGSVPATLGNLMKLRVLDLSKQSLSGELPVEVFGLPSLEVVALDGNRLSGSVPEGFSSIVSLRYLNLSSNAFVGNIPSTYGFISSLVVLSLSHNFISGSIPNEIGGCSQLEVLQLRSNHLVGNIVPSVISQLSRLKELNLGQNGFKGDIPDGISKCSSLNLLSLDGNHLTGHIPQSLSKLSSLKWLNLSSNQLTGEIPVDLSRISGLKYLNVSNNNLEGEIPELLSSKFNDPSVYAMNKKLCGKPLHKECGKLKRRKRKKLIIIISVAAAGLCLLALCCCGYVYSLLRWRRKLREGVTGEKKRSPTSAGSNGERNSRGSGENGGPKLIVFNNKITYAETLEATRNFDEENVLSRGKHGLVFKASYQDGMVLSIRRLPNGATLIDETTFRKEAESLGKVKHRNLTVLRGYYPGPPPDVRLLVYDYMPNGNLGTLLQEASQQDGHVLNWPMRHLIALGIARGLGYLHSVEIVHGDVKPQNVLFDADFEAHLSEFGLDRLTMVNVPGPIESAASSSSLTTTPVGSLGYVAPEAVLTGQVTKEGDIYSFGIVLLEILTGRKAVMFTQDEDIVKWVKKQLQKGLISELLEPGLLEIDQESSEWEEFLLGVKVALLCTAHDPLDRPSINDIVFMLEGCRVGPDIPSSADPTTLPSPVS 1153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05652 1153 Pfam Leucine Rich Repeat 151 172 IPR001611 GO:0005515
Trre5g05652 1153 Pfam Leucine Rich Repeat 346 368 IPR001611 GO:0005515
Trre5g05652 1153 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 33 194 - -
Trre5g05652 1153 MobiDBLite consensus disorder prediction 804 819 - -
Trre5g05652 1153 FunFam Leucine-rich repeat receptor protein kinase EMS1 337 436 - -
Trre5g05652 1153 Pfam Leucine rich repeat 514 572 IPR001611 GO:0005515
Trre5g05652 1153 Pfam Leucine rich repeat 659 718 IPR001611 GO:0005515
Trre5g05652 1153 Pfam Leucine rich repeat 173 232 IPR001611 GO:0005515
Trre5g05652 1153 Pfam Leucine rich repeat 417 477 IPR001611 GO:0005515
Trre5g05652 1153 SUPERFAMILY L domain-like 35 410 - -
Trre5g05652 1153 ProSiteProfiles Leucine-rich repeat profile. 442 463 IPR001611 GO:0005515
Trre5g05652 1153 SUPERFAMILY L domain-like 292 578 - -
Trre5g05652 1153 PANTHER UNNAMED PRODUCT 322 1061 - -
Trre5g05652 1153 SUPERFAMILY L domain-like 490 747 - -
Trre5g05652 1153 Gene3D Transferase(Phosphotransferase) domain 1 926 1137 - -
Trre5g05652 1153 ProSiteProfiles Leucine-rich repeat profile. 707 729 IPR001611 GO:0005515
Trre5g05652 1153 Gene3D Phosphorylase Kinase; domain 1 823 925 - -
Trre5g05652 1153 Gene3D Ribonuclease Inhibitor 318 476 IPR032675 -
Trre5g05652 1153 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 213 309 - -
Trre5g05652 1153 Gene3D Ribonuclease Inhibitor 196 317 IPR032675 -
Trre5g05652 1153 SMART serkin_6 847 1129 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g05652 1153 SMART LRR_typ_2 219 243 IPR003591 -
Trre5g05652 1153 SMART LRR_typ_2 416 439 IPR003591 -
Trre5g05652 1153 SMART LRR_typ_2 464 488 IPR003591 -
Trre5g05652 1153 SMART LRR_typ_2 440 463 IPR003591 -
Trre5g05652 1153 SMART LRR_typ_2 633 657 IPR003591 -
Trre5g05652 1153 SMART LRR_typ_2 536 559 IPR003591 -
Trre5g05652 1153 SMART LRR_typ_2 267 291 IPR003591 -
Trre5g05652 1153 SMART LRR_typ_2 584 608 IPR003591 -
Trre5g05652 1153 SMART LRR_typ_2 344 368 IPR003591 -
Trre5g05652 1153 SMART LRR_typ_2 149 173 IPR003591 -
Trre5g05652 1153 SMART LRR_typ_2 101 125 IPR003591 -
Trre5g05652 1153 SMART LRR_typ_2 681 705 IPR003591 -
Trre5g05652 1153 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 926 1138 - -
Trre5g05652 1153 ProSitePatterns Serine/Threonine protein kinases active-site signature. 970 982 IPR008271 GO:0004672|GO:0006468
Trre5g05652 1153 FunFam Putative LRR receptor-like serine/threonine-protein kinase 812 925 - -
Trre5g05652 1153 PRINTS Leucine-rich repeat signature 681 694 - -
Trre5g05652 1153 PRINTS Leucine-rich repeat signature 443 456 - -
Trre5g05652 1153 MobiDBLite consensus disorder prediction 799 827 - -
Trre5g05652 1153 Pfam Leucine rich repeat N-terminal domain 35 73 IPR013210 -
Trre5g05652 1153 Pfam Protein kinase domain 849 1126 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g05652 1153 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 466 755 - -
Trre5g05652 1153 SUPERFAMILY Protein kinase-like (PK-like) 827 1141 IPR011009 -
Trre5g05652 1153 Gene3D Ribonuclease Inhibitor 33 195 IPR032675 -
Trre5g05652 1153 Gene3D Ribonuclease Inhibitor 477 760 IPR032675 -
Trre5g05652 1153 ProSiteProfiles Protein kinase domain profile. 847 1139 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05652 Trre-Chr5 56596960 56600421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05652 31 1152 Receptor kinase-like Gene Family AT4G36180 61.858 0.0 1280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Trre5g05652 Pkinase 5.5e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05652 - - gmx:100784917 1576.99