Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05647 ATGAAGATCCAGTGCGATGTGTGTAACAAACAGCAAGCATCTTTATTCTGCACCGCCGACGAAGCTGCCCTATGCTCCGCCTGTGACCACTGCGTCCATCATGCTAACAAGCTCGCCTCTAAACACCTTCGCTTCTCCCTCATGGACGCTAATTTTCCCAACAATTTACCTCTCTGTGATATTTGCCATGAAAGAAAAGGATTTGTTTTTTGTCAAGTAGATAGAGCGATTTTGTGCAAAGAGTGTGATTTGAAGATTCATGCTACCAACGAACACACAAAGAAGCATAATAGGTTTCTTCTGAGTGGGATTAAACTGCTCTCTCCTGCTCCTCCTCCTCCTCCTGCCATCAACAAGGGTAGTTTGGTAATTACAAATAATGAAGAAACTGCAGGTAGTTTCACTATATCAGAGTACTTGATAAACACTATCCCTGGTTGGAAGTTTGAAGATTTCATTGATTCCTCTTCTTCTGTTGGTGAAGATACTACCTTGTTTGTGCATCATGATGATGATGATGCTTATATTGATCAAGAAAAATTTCTGGTTCCTCAAGCACCACAGTCTTCTTTTTATTATTCTGAAAAAATGGATAGCAGATCATCAGAAACAATCAAGGAAGCCAATCCTCTCAAATTATTCAGCAGCTTTGGGGATGATCATATCATGAAAGTTCCACAGATATAA 687 0.4017 MKIQCDVCNKQQASLFCTADEAALCSACDHCVHHANKLASKHLRFSLMDANFPNNLPLCDICHERKGFVFCQVDRAILCKECDLKIHATNEHTKKHNRFLLSGIKLLSPAPPPPPAINKGSLVITNNEETAGSFTISEYLINTIPGWKFEDFIDSSSSVGEDTTLFVHHDDDDAYIDQEKFLVPQAPQSSFYYSEKMDSRSSETIKEANPLKLFSSFGDDHIMKVPQI 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05647 228 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Trre5g05647 228 CDD Bbox1_BBX-like 5 47 - -
Trre5g05647 228 SMART bboxneu5 54 101 IPR000315 GO:0008270
Trre5g05647 228 SMART bboxneu5 4 47 IPR000315 GO:0008270
Trre5g05647 228 Pfam B-box zinc finger 55 94 IPR000315 GO:0008270
Trre5g05647 228 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 190 - -
Trre5g05647 228 Gene3D Classic Zinc Finger 1 101 - -
Trre5g05647 228 ProSiteProfiles Zinc finger B-box type profile. 54 101 IPR000315 GO:0008270
Trre5g05647 228 CDD Bbox1_BBX-like 58 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05647 Trre-Chr5 56572583 56573425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05647 1 176 C2C2-CO-like Transcription Factor Family AT1G75540 47.727 1.20e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre5g05647 zf-B_box 3.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05647 - - tpra:123898686 303.908