Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05641 ATGATGAGGCGTAGTGGAGGAGGAATGAATTGTCAGGATTGTGGGAACCAAGCAAAAAAAGACTGTACACATCTAAGATGTAGAACTTGTTGTAAGAGTCGAGGGTTTCATTGTCAAACACATGTTAAAAGTACTTGGGTTCCAGCTTCTAAACGCCGTGAAAGACAACAACAACATCATCATCTCTCTATGTTACAACAACACTTTCATCGTCCTAAACCACACTCACTCAATCAACAACCACAACAAGGGTTTGAGTTGGGTCAATTTCCACCTGAAGTGAGTTCTCCAGGAGTAACGTTTAAGTGTGTGAGAGTGAGTTCATTGGACGGTCCAGATCATGATCAATGTGCATATCAAACGGCTGTCAACATAGGAGGACATGTTTTCAAAGGAATTCTATATGATCAAGGTCCATCAAGTCTTTACACTACTAGTACTGCACCTATTATTCATGAAGGTTCTTCTGGTGGAGTTCATCATCATCAACCTCAACAACTTGATTTCTTAACTGCTGCAACAACAGCCACAACAACCACCGGTGTCTCGTTCGACCCTTCGCTTTATTCCGCTCCGCTAAATGTTTTCATGGCTGCAGCTGGTACACAATTTTTCCACCCCCAACATCCTAATTGA 636 0.4214 MMRRSGGGMNCQDCGNQAKKDCTHLRCRTCCKSRGFHCQTHVKSTWVPASKRRERQQQHHHLSMLQQHFHRPKPHSLNQQPQQGFELGQFPPEVSSPGVTFKCVRVSSLDGPDHDQCAYQTAVNIGGHVFKGILYDQGPSSLYTTSTAPIIHEGSSGGVHHHQPQQLDFLTAATTATTTTGVSFDPSLYSAPLNVFMAAAGTQFFHPQHPN 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05641 211 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 4 194 IPR007818 GO:0003700|GO:0006355
Trre5g05641 211 Pfam Domain of unknown function (DUF702) 8 140 - -
Trre5g05641 211 NCBIfam LRP1 C-terminal domain 89 139 IPR006511 -
Trre5g05641 211 NCBIfam putative zinc finger domain, LRP1 type 10 52 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05641 Trre-Chr5 56520288 56521170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05641 7 207 C2H2 Transcription Factor Family AT1G75520 47.541 1.72e-59 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Trre5g05641 DUF702 1e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05641 - - tpra:123898648 380.563