Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05635 ATGAAATCAGACATGGAAGTTGAGGAGAGAAAAAAGTTGAAGAAGGCAGCACATGCCAACTCCAGAAAAGGTTGTATGAGAGGTAAAGGTGGTCCTGAAAACGCAAGTTGCCCTTACAAGGGCGTGAGACAGAGAACCTGGGGTAAATGGGTTGCTGAAATTCGTGAACCCAATCGTGGCGCTCGCCTTTGGCTTGGAACATTTAAAACATCTCGTGAAGCGGCCTTGGCTTATGACACTGCTGCACGTAAGCTTTATGGATCAAGGGCCAAGCTTAATCTACCCGAAATCTCCATGTCTGTGAAATCTCGGGGTCAACAATCTCTCCCTGACCCTCAAATTGTCAAAATGGAAGATCCGCACCCATCTCAAGTTAATCACAACGCAGATATGGTCATGAGTTCTGATTTCAATACCAACCCTAACCCTAACCTTACAGTACCAATGGCTTCTCAACCATTACACAACAACGATTGTGCGCCATCTTTACCCTTGGATAGCAACCCTAATCCAAGTGATCCAACCTTTGAGGATTTTTTGCCATCTCTAGAAACAATGAATGGTGGTTTTTCAAGTTTAAGTGATTCCCTGTGGCCAGATGATGCCATGCCAATAGATTTTTCTATTAATTATGCAAATTCTGAGATTTTTGCGGAGGCAAACATGGCAGATGGAAATGTTTGGGACTCATTGCAGACTCCATGGTCCATGTAA 714 0.4398 MKSDMEVEERKKLKKAAHANSRKGCMRGKGGPENASCPYKGVRQRTWGKWVAEIREPNRGARLWLGTFKTSREAALAYDTAARKLYGSRAKLNLPEISMSVKSRGQQSLPDPQIVKMEDPHPSQVNHNADMVMSSDFNTNPNPNLTVPMASQPLHNNDCAPSLPLDSNPNPSDPTFEDFLPSLETMNGGFSSLSDSLWPDDAMPIDFSINYANSEIFAEANMADGNVWDSLQTPWSM 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05635 237 Gene3D AP2/ERF domain 38 96 IPR036955 GO:0003700|GO:0006355
Trre5g05635 237 MobiDBLite consensus disorder prediction 1 37 - -
Trre5g05635 237 ProSiteProfiles AP2/ERF domain profile. 38 95 IPR001471 GO:0003700|GO:0006355
Trre5g05635 237 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 12 181 - -
Trre5g05635 237 MobiDBLite consensus disorder prediction 1 15 - -
Trre5g05635 237 FunFam Ethylene-responsive transcription factor 2 37 96 - -
Trre5g05635 237 CDD AP2 39 96 IPR001471 GO:0003700|GO:0006355
Trre5g05635 237 SMART rav1_2 38 101 IPR001471 GO:0003700|GO:0006355
Trre5g05635 237 Pfam AP2 domain 39 87 IPR001471 GO:0003700|GO:0006355
Trre5g05635 237 SUPERFAMILY DNA-binding domain 38 95 IPR016177 GO:0003677
Trre5g05635 237 PRINTS Ethylene responsive element binding protein signature 61 77 IPR001471 GO:0003700|GO:0006355
Trre5g05635 237 PRINTS Ethylene responsive element binding protein signature 39 50 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05635 Trre-Chr5 56462152 56462865 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05635 12 96 AP2-EREBP Transcription Factor Family AT1G75490 83.529 1.29e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre5g05635 AP2 7.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05635 - - gmx:100797850 251.906
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05635 5 56462152 56462865 Trre5g05635 5 56462152 56462865 ECH
Trre1g00143 1 1113263 1114123 Trre5g05635 5 56462152 56462865 PCT