Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05631 ATGAACAGTGAGGCTCTTGTTGGACACGGTACGTCTGGACCCTCAGGGGTGAGACAGAGAACTTCGGGTAAATGCGTTGCTGAAATTCATGAACCCAATCGTGGCGCTCGCCTTTGGTTTGGAACATTTAAAACATCTTGTGAAGGTGCCTTAACTTATGACGTTGCACTTTTGGGCCTTGCCAAGTTCTCTCAATCAAATCCTCCGACATGTTTCAAGATCAACGGTAATTTAAGCTCAAGTTGTTGTCCCAGAACCCATTTGACGATGGAAGTTTCTAGGTTGCTTAAACATCTTGTGGGTACAAGATTATATTTGTGCGGGTTGTGTTTACTCTCTACTAATGTTTAA 351 0.433 MNSEALVGHGTSGPSGVRQRTSGKCVAEIHEPNRGARLWFGTFKTSCEGALTYDVALLGLAKFSQSNPPTCFKINGNLSSSCCPRTHLTMEVSRLLKHLVGTRLYLCGLCLLSTNV 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05631 116 SMART rav1_2 16 79 IPR001471 GO:0003700|GO:0006355
Trre5g05631 116 SUPERFAMILY DNA-binding domain 13 61 IPR016177 GO:0003677
Trre5g05631 116 MobiDBLite consensus disorder prediction 1 20 - -
Trre5g05631 116 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 16 57 - -
Trre5g05631 116 Gene3D AP2/ERF domain 15 73 IPR036955 GO:0003700|GO:0006355
Trre5g05631 116 CDD AP2 16 60 IPR001471 GO:0003700|GO:0006355
Trre5g05631 116 ProSiteProfiles AP2/ERF domain profile. 13 73 IPR001471 GO:0003700|GO:0006355
Trre5g05631 116 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05631 Trre-Chr5 56439718 56445005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05631 16 60 AP2-EREBP Transcription Factor Family AT1G75490 73.333 3.60e-16 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05631 - - mcha:111009978 69.707