Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05621 ATGTCAAATTCCATGACTCATCATAATCAATTTGAGAACCAAGAGCTACTAGGTGGTGGTGGTGGTGGTTATGTTACATCTTCATCTTCTTTAAGGAACAACAATAATGCATCATCATATCATGAATCACTTGGAACATTTTCTAACAACATTGAACTAACACAAGGTACTGAAATGAGCCACACAAGACATTTAATGGATCTACTTGGAGCAGCAAATGAGAACAATCACCAAACAAAACATGGTTTATCACTTTCTTTAGGTTCTCATATGCTTGTTGATGAATACAACAGAAACCGTTCCTTAAATCAAGGTCTTATGATCAATCCAAGTTACTTCATGTCTGGTCAAGATCAGACACGTACTGAACCTTGTAATCAATCTGTTGTGGAGAATCTAACTAGTGATTATTTTTACAGTAGTAGTGGTGGAAGTGGAAATGGAAATGGAAATGGAAATGGAAATTTTGGTTCTGGTTCTAATAATAACTCAATGTTGAACCGTTCTACTTCTACTTCTTATGGAGGTGAGAGTTTTGGTTCTGTTATTGGAAACTCTAGATATCTTAAACCAGTACAGTCACTTCTTCAAGATCTTGTTGATGTTGGTGGAAATGTGATTGATAGAATGAATGAAAAGTATGCTGAGAAATTGTTTCATGGAAGTAGAACTGGTGCTAGAACACTCTCCTCTGAGCTCAAAGCAGAGTTAAGGATTCATGGACATTTATTAGCTGATAAACATGAACATCAAGTCAAAATTGCAAAGTTCATTGCTTTGTTGGATGAGGTTGAGAGTAGATATGAGAAATACTACCATCAAATGGAAGAAGTGGTATCATCTTTTGAAATGATAGCAGGTTTAGGGGCTGCAAAGTGTTACACTGCTTTGGCACTTCAAGCAATGTCTAGACATTTCTGTAGCTTAAGAGATGCAATAATGTCACAAATAAATGTGGAGAAAAGAAAACTATTTCAAGATGTACCAAAAATCAACAGTGGATTGTCTCAACTGAGCTTATTTGAGAAAGAAAATAATAAACAGAATAGAATGTCTCTTCAACAACTTGGAGTTATTCAAAACCAAAGACAAGTGTGGAGACCCATTAGAGGATTGCCTGAAACTTCTGTAGCTATTCTTCGTGCTTGGTTATTCGAGCATTTTCTTCACCCCTACCCTAATGATTCTGAGAAGTTAATGCTGGCATCCCAAACAGGCTTAACTAAAAACCAAGTATCAAATTGGTTCATAAATGCAAGAGTACGTCTATGGAAACCAATGATAGAAGAAATGTACAAAGAAGAGTTTGGAGAGTCTTCTGAAGATTCCAACCCACCAGCTAACAATTACATGTCAAGGGAAGATGCAACTGATTGTGTGGAAGATTAG 1389 0.3629 MSNSMTHHNQFENQELLGGGGGGYVTSSSSLRNNNNASSYHESLGTFSNNIELTQGTEMSHTRHLMDLLGAANENNHQTKHGLSLSLGSHMLVDEYNRNRSLNQGLMINPSYFMSGQDQTRTEPCNQSVVENLTSDYFYSSSGGSGNGNGNGNGNFGSGSNNNSMLNRSTSTSYGGESFGSVIGNSRYLKPVQSLLQDLVDVGGNVIDRMNEKYAEKLFHGSRTGARTLSSELKAELRIHGHLLADKHEHQVKIAKFIALLDEVESRYEKYYHQMEEVVSSFEMIAGLGAAKCYTALALQAMSRHFCSLRDAIMSQINVEKRKLFQDVPKINSGLSQLSLFEKENNKQNRMSLQQLGVIQNQRQVWRPIRGLPETSVAILRAWLFEHFLHPYPNDSEKLMLASQTGLTKNQVSNWFINARVRLWKPMIEEMYKEEFGESSEDSNPPANNYMSREDATDCVED 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05621 462 CDD homeodomain 366 427 IPR001356 GO:0003677
Trre5g05621 462 Pfam Associated with HOX 182 314 IPR006563 -
Trre5g05621 462 Pfam Homeobox KN domain 383 422 IPR008422 GO:0003677|GO:0006355
Trre5g05621 462 Gene3D - 361 441 - -
Trre5g05621 462 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 86 443 - -
Trre5g05621 462 SMART prehox3 177 315 IPR006563 -
Trre5g05621 462 MobiDBLite consensus disorder prediction 141 171 - -
Trre5g05621 462 ProSiteProfiles 'Homeobox' domain profile. 385 426 IPR001356 GO:0003677
Trre5g05621 462 MobiDBLite consensus disorder prediction 1 30 - -
Trre5g05621 462 SMART HOX_1 366 430 IPR001356 GO:0003677
Trre5g05621 462 MobiDBLite consensus disorder prediction 435 462 - -
Trre5g05621 462 SUPERFAMILY Homeodomain-like 372 433 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05621 Trre-Chr5 56370110 56372168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05621 159 445 Homeobox Transcription Factor Family AT2G16400 46.897 1.03e-79 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Trre5g05621 POX 2.9e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05621 - - tpra:123893532 791.956