Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05615 ATGAACTTGGATCATTTGAAGTGTTCTTTGTCTAGAGTTTTAGTGGATTATTATCCTTTAGCTGGGAGATTGAGGAGTTGTTCCTCTAATTTGGATGATGATGATGATAAGAAGCTTGAAGTTGATTGCAATGGTGAAGGTGCTTTGTTTGTTGAAGCTTTCATGGCTATAACTGCTGATGAATTAGTTGAACCTTCTAAGTTGCCAAATAAGTCATGGAGGAAGTTCATGTATAAAGTGGAATCTCAAAGTTTTTTAGATGTTCCTCCTCTTATTGTTCAGTTAACAAGTCTTCGTTGTGGGGGAATGATTCTATGCACCGCAATCAACCATTGCCTATGCGATGGATTCGGCACATCACAATTTCTACACGCATGGGCACAACTCACCAAACAACCTCAAACAAATTTAACCATCCAACCCTACCACTGGCGACACGTGTTGAAGCCACGACACCCTCCCACGGTAAACCTCCATAATCCCGGATACACCAGAACACAACCAACCCCTCAAGTAAACCTCCTCAAGTTGATACAATCACAACCCTTAGTACCCACATCCTTTATCTTTAATCCCTCCTATATCCTCTACTTAACGAAACAATGCACCCCTTCATTAAAGTGCACTACATTTGAAGTAGTTGCGGCACACACGTGGCGCTCTTGGATTCGATCATTGAATTTATCCTTACCATCCAATTTAACTGTGAAGTTACTTTTCTCTATCAATGTCCGCACCATATTGAACCTACAAAAAGGATATTACGGAAATGGGTTTTTATTAGGTTGCGCTGAAAGTACTATAAAGAATTTAGTAGAGAATAACCTACACCATGGTGTGAAACTGGTGCAAAAGGCAAAATCAACGGTGAATAATGAAGAGTATATAAGATCAACGGTAGATTTGTTGGAGGATAAAATGGTAAAAACGGATGTTTCAACTAGTTTGGTTATATCACAATGGTCTAAATTGGGGTTAGAAGAAGTTGATTTTGGAGAGGGAAAACCGGTTCACATGGGTCCTTTAACAAGTGATGTTTATTGTTTATTTTTACCGGTTATTGGCGGTGATGTTAATGCTGTGAGAGTGGTTGTTTCTGTGCCGGAGAGTATGGTGGAAAGTTTTCAATATTATATGAATCAAAGCTGGGAAAATAAAATAGAAAATGGAGATTATGTTAAGAATGACTATCATGCAAATGAAAGCTCATTTTTCTAA 1218 0.3851 MNLDHLKCSLSRVLVDYYPLAGRLRSCSSNLDDDDDKKLEVDCNGEGALFVEAFMAITADELVEPSKLPNKSWRKFMYKVESQSFLDVPPLIVQLTSLRCGGMILCTAINHCLCDGFGTSQFLHAWAQLTKQPQTNLTIQPYHWRHVLKPRHPPTVNLHNPGYTRTQPTPQVNLLKLIQSQPLVPTSFIFNPSYILYLTKQCTPSLKCTTFEVVAAHTWRSWIRSLNLSLPSNLTVKLLFSINVRTILNLQKGYYGNGFLLGCAESTIKNLVENNLHHGVKLVQKAKSTVNNEEYIRSTVDLLEDKMVKTDVSTSLVISQWSKLGLEEVDFGEGKPVHMGPLTSDVYCLFLPVIGGDVNAVRVVVSVPESMVESFQYYMNQSWENKIENGDYVKNDYHANESSFF 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05615 405 Pfam Transferase family 4 378 - -
Trre5g05615 405 Gene3D - 176 381 IPR023213 -
Trre5g05615 405 Gene3D - 1 165 IPR023213 -
Trre5g05615 405 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 3 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05615 Trre-Chr5 56326144 56329013 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05615 6 341 Monolignol Biosynthesis Gene Families AT5G48930 29.006 5.93e-39 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05615 - - gmx:100810619 568.926