Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05612 ATGGAATCTACAAATCTACATCATCTCCAAGACCAACAACATCCTCCTCCTGTTGGAGGAACCACCACCACCCACTCTTGGACCCCAAACTTCACTTTGAATAATGCTGCAGGTAGCTTCAACTCAAATAATCTCCAAGAAGATAATCCTAGATATTCAAGATCATCTTTAACACACAACAAGAACCAAATGATTCAAGATTTAGGTTATCATCATCATGATCAGTGGACAAGTACTCATGCTGCTGCAGAAGAGAGCTGCTTAAACAGAAACCATGAGTCAAGTCATAACAACTTAGATTCACATGAGTTTTCCAAGAATAGTAGTAATAGTACTATTAAGGAAGAGATCTCATTTGCTAATTTCCCCAAATTCACTGAAATGCTTAATTACACTGCCAACTTAGAAAACTATCCAATACTTCCAACAACTACAACACAGATGAAGAATATTAATAATGATGAACACAAAGATATGAATGCTCTCATGCTGAAGACCCTTTTTACTGCTGGAGATTTTTATAATGCTCAAAATTATCCAAATGTTGGAGGCACTACTAGTAACAACAATATTAGTAGCCAGATTCATCCCAGTATAAATATCTCAAACTTGAATCATTACTCATCTTCTTCGCCCGGTTCATCCGCCTTGGATATCAACATGCAGTCATTAGATCTATTAACTAATTCACCAACATCATTTAGCCAACATTCACAAGATCATCATAATCATCTTGCTAGATTTACTTCTCAAGATCATCATCATCATGACAACCTTTCTTTTCATCTAATTCATCCCATGCAGCAACCCACCAATATCTCATCGTCTACTAACTCTATTAATAAGCCATTGCTATTGAGCAATGTTGAAACAAAGAGAGGATGCACCTTGATGGAATCAAAGGCTTCTCAATCTCAAACAGCATTGAAAAAACCACGATCTTCATCAGAACCACGCCCTTCATGCCCACCTTTTAAGGTTAGGAAAGAGAAATTAGGGGATAGGATTGCATCTCTTCAACAGTTGGTGGCTCCTTTTGGAAAGACAGACACTGCATCCGTACTCATGGAAGCTATAGGATACATCAAGTTCCTTCAAGGCCAAGTCGAGACACTAAGTGTTCCCTATATGAAGTCATCACAGAACCAAAACAACAGAGTGATGCAAGGGGGTTCAGCCACAAGTGACACAAATGGTGAATCAGAGCAAGATCTGAGAAGTCGAGGCCTCTGTCTAGTGCCATTGTCATGCATGTCATACATAGCTGGTGATGGCTGCCCTGAGGTTTGGCAACAACGTCCAAACTTTGGTGGACCAGCTTAA 1323 0.3938 MESTNLHHLQDQQHPPPVGGTTTTHSWTPNFTLNNAAGSFNSNNLQEDNPRYSRSSLTHNKNQMIQDLGYHHHDQWTSTHAAAEESCLNRNHESSHNNLDSHEFSKNSSNSTIKEEISFANFPKFTEMLNYTANLENYPILPTTTTQMKNINNDEHKDMNALMLKTLFTAGDFYNAQNYPNVGGTTSNNNISSQIHPSINISNLNHYSSSSPGSSALDINMQSLDLLTNSPTSFSQHSQDHHNHLARFTSQDHHHHDNLSFHLIHPMQQPTNISSSTNSINKPLLLSNVETKRGCTLMESKASQSQTALKKPRSSSEPRPSCPPFKVRKEKLGDRIASLQQLVAPFGKTDTASVLMEAIGYIKFLQGQVETLSVPYMKSSQNQNNRVMQGGSATSDTNGESEQDLRSRGLCLVPLSCMSYIAGDGCPEVWQQRPNFGGPA 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05612 440 Gene3D - 326 390 IPR036638 GO:0046983
Trre5g05612 440 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 326 379 IPR036638 GO:0046983
Trre5g05612 440 MobiDBLite consensus disorder prediction 381 400 - -
Trre5g05612 440 MobiDBLite consensus disorder prediction 299 314 - -
Trre5g05612 440 MobiDBLite consensus disorder prediction 88 110 - -
Trre5g05612 440 MobiDBLite consensus disorder prediction 299 326 - -
Trre5g05612 440 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 316 365 IPR011598 GO:0046983
Trre5g05612 440 CDD bHLH_AtbHLH_like 323 373 IPR045239 -
Trre5g05612 440 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 111 419 - -
Trre5g05612 440 MobiDBLite consensus disorder prediction 1 30 - -
Trre5g05612 440 FunFam Transcription factor bHLH123 family 326 388 - -
Trre5g05612 440 MobiDBLite consensus disorder prediction 381 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05612 Trre-Chr5 56296704 56303400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05612 16 438 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 36.403 1.27e-55 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05612 - - mtr:25490216 616.69