Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05587 ATGGGTTGGACAAGAGAAGAAAATAGGCGTTTTGAGGATGCACTTGCGGTATATGGTCCAGAAGATCCAAATAGGTGGCAACATGTGGCTAATGCTGTGGGTGGAAAATCTATAAAAGAGGTGAAAATGCACTATGAGATCCTTAAGGAAGATCTCATTCGAATTGAGCTTGATCAAATTCCACTACCTACTTATAGGGGGGGTGCTGGTATCAATATCAACAATGGAAGGCAATTTTTTGGTGATGAACAAAGGCGAATGAGGAATCTTAATATCCACTGA 282 0.4078 MGWTREENRRFEDALAVYGPEDPNRWQHVANAVGGKSIKEVKMHYEILKEDLIRIELDQIPLPTYRGGAGININNGRQFFGDEQRRMRNLNIH 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05587 93 SUPERFAMILY Homeodomain-like 3 55 IPR009057 -
Trre5g05587 93 ProSiteProfiles Myb-like domain profile. 1 49 IPR001005 -
Trre5g05587 93 SMART sant 3 51 IPR001005 -
Trre5g05587 93 Pfam Myb-like DNA-binding domain 3 45 IPR001005 -
Trre5g05587 93 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 53 IPR017930 -
Trre5g05587 93 ProSiteProfiles SANT domain profile. 1 53 IPR017884 -
Trre5g05587 93 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 2 69 IPR044636 GO:0003700
Trre5g05587 93 FunFam Transcription factor SRM1 1 62 - -
Trre5g05587 93 CDD SANT 3 49 IPR001005 -
Trre5g05587 93 Gene3D - 2 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05587 Trre-Chr5 56167756 56170170 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre5g05587 Myb_DNA-binding 6.7e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05587 - - psat:127084298 155.221