Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05568 ATGCCGACACCGCCAAAAAAGAAGCGAAGCCTCGCTGGAATGCCAGATCCAAATGCTGAAGTAATCGCTTTATCACCAAAAACTTTGTTAACGACGAACCGTTTCGTATGCGAGATCTGCAACAAAGGATTCCAACGGGAACAGAATCTGCAACTTCACCGGCGAGGACATAACATGCCATGGAAACTCCGGCAGCGAGCGACCGAAGAAATCCGCAAGAAAGTGTACGTTTGTCCAGAACCTTCCTGTGTACACCACAATCCGTCAAGAGCGCTAGGTGACCTAACCGGCGTGAAAAAGCACTTTAGTAGAAAGCACGGTGAGAAAAAGTGGAAATGTGAACGTTGTTCTAAAAATTATGCTGTGAAATCTGATTGTAAAGCACATATGAAGAGTTGTGGAAGTAGAGAATATAAATGTGATTGTGGCTCCTTGTTCGCTAGGAGGGATAGTTTTGTTACGCACAGAGCGTTCTGCGATGTAGTGTTGGCGGATGAGGGTGGGAAAGGAGATAGCAATGTTGTTGTCGGTTCATCTGCACCGCCAACGCCTCCACTTACTCCGTCAACAATATCTGTGGCGTCTCCTCCTACTATCTTGTCTATTCCCAACTCAGATATTGCAGAAAACCCAACAAAGCTGTCACCTCCATCTTCAAACGCTTCCGCTTCTACCAGTTGTTGTTCCTCATTCAGCAGCCTCATGACAAGCTTGGCTCACTCGGATTGCCCCGCCACATCTTTCTCTGTCACAGAACCTACAACCCTCTCACTTTTCACACCACTCTATCTCTCCAATAACAATACCAACAATGATCAGTACCCTCTTCCCCACTATAGTCCTGCATTATCTGCTACTGCATTACTCCAAAAAGCAGCTCAAATGGGTTCACGTTCATCCAATTCATCCTTGCTTCATGCTTTAGGCTTGAAAGAAAACAGTGTCAGTATTAGCAGCACCACAACAGATAAATGGAATGGCCATGGTAATGTAAAACAAGAGAATGAACTTGTGCCAGATTACCTTGGGCTTGGACTACTTCCCTGTGGGAATGAGATTATGGGCTCATCGGGCCAACCCATGACCCGTGATCTTCTTGGTCTAAGCATGGGATTGGGTAGAGGGGATGATGATCTTTCTGCTTTGCTCACATCTTTTGGAGGGAACTTCGATTCATCCGCATAG 1185 0.4608 MPTPPKKKRSLAGMPDPNAEVIALSPKTLLTTNRFVCEICNKGFQREQNLQLHRRGHNMPWKLRQRATEEIRKKVYVCPEPSCVHHNPSRALGDLTGVKKHFSRKHGEKKWKCERCSKNYAVKSDCKAHMKSCGSREYKCDCGSLFARRDSFVTHRAFCDVVLADEGGKGDSNVVVGSSAPPTPPLTPSTISVASPPTILSIPNSDIAENPTKLSPPSSNASASTSCCSSFSSLMTSLAHSDCPATSFSVTEPTTLSLFTPLYLSNNNTNNDQYPLPHYSPALSATALLQKAAQMGSRSSNSSLLHALGLKENSVSISSTTTDKWNGHGNVKQENELVPDYLGLGLLPCGNEIMGSSGQPMTRDLLGLSMGLGRGDDDLSALLTSFGGNFDSSA 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05568 394 SUPERFAMILY beta-beta-alpha zinc fingers 34 131 IPR036236 -
Trre5g05568 394 MobiDBLite consensus disorder prediction 202 221 - -
Trre5g05568 394 SMART c2h2final6 76 106 IPR013087 -
Trre5g05568 394 SMART c2h2final6 35 57 IPR013087 -
Trre5g05568 394 SMART c2h2final6 111 131 IPR013087 -
Trre5g05568 394 ProSitePatterns Zinc finger C2H2 type domain signature. 37 57 IPR013087 -
Trre5g05568 394 ProSiteProfiles Zinc finger C2H2 type domain profile. 35 57 IPR013087 -
Trre5g05568 394 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 5 369 IPR031140 -
Trre5g05568 394 MobiDBLite consensus disorder prediction 170 194 - -
Trre5g05568 394 Gene3D Classic Zinc Finger 35 80 - -
Trre5g05568 394 FunFam protein indeterminate-domain 12-like 14 82 - -
Trre5g05568 394 Pfam Zinc-finger double-stranded RNA-binding 35 57 IPR022755 -
Trre5g05568 394 Gene3D Classic Zinc Finger 87 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05568 Trre-Chr5 56055350 56057455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05568 6 388 IDZ Gene Family AT3G50700 48.681 1.65e-114 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre5g05568 zf-C2H2_jaz 4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05568 K25869 - psat:127082208 569.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05568 5 56055350 56057455 Trre5g05568 5 56055350 56057455 ECH