Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05564 ATGGCTTCTGACGGAGCAACTTCGGCGGCGAACAGTCGGAGGAAACCGTCGTGGAGGGAGAGAGAGAATAACAGGAGGAGAGAGAGACGGAGAAGAGCCATAGCTGCAAAGATTTACGCAGGATTAAGGTCTCAGGGGAATTACAATTTACCTAAACACTGTGATAACAATGAAGTGTTGAAAGCTCTTTGTGCTGAAGCTGGTTGGACTGTTGAAGAAGATGGCACCACCTATCGCAGGGGATCGAGGGCTGCAACACCAGGCGATGGTGCGGGAAACAGAAACAATCCATTTTCATCGCAAAATCCAAGTCCTCTTTCATCTTCATTTCAAAGTCCAATCCCATCCTACCAAGTTAGCCCTTCTTCCTCTTCGTTTCCGAGCCCGTCTCGTATGGATGCAAACAACAACGCATCGAATCTCTTTCCATACGGTCGTGCTGTGTTCCCCAACATGTGTCTCCCACCATTAAGAATATCAAACAGCGCACCTGTGACGCCTCCCATCTCGTCACCAACCTCAAGAAATCCTAAACCCATGATTCCCACATGGGAATCTATTGCCAAAGCATCCGCTGCATCGTTCAACCACCCTCTCTTTGCAGCTTCTGCGCCCACTAGCCCATCGCACCGTCACCTTTATGCACCGCCTACTATACCTGAATGTGACGAGTCAGATACTTCTACTGTTGAGTCTGGCCAGTGGTTGAACTTCCAAGCCTTTGCAAATGCTGCTAAATCAGTCTCTCCTACATTGAACTTTATGAAACCTGTAATCAATGAGCAGCATAACATGGTGCCTGATAGCAGAATGCAAGAGATGAGGATTTCAGAGCCAGAGTTTGGAGTGCAGGTGGTGAAGCCTTGGGTTGGGGAAAGAATTCATGAAGTGGGTTTGGACGATTTGGAGCTTACTCTTGGAAATGGAAAGGCTCCCAGTTAA 942 0.4809 MASDGATSAANSRRKPSWRERENNRRRERRRRAIAAKIYAGLRSQGNYNLPKHCDNNEVLKALCAEAGWTVEEDGTTYRRGSRAATPGDGAGNRNNPFSSQNPSPLSSSFQSPIPSYQVSPSSSSFPSPSRMDANNNASNLFPYGRAVFPNMCLPPLRISNSAPVTPPISSPTSRNPKPMIPTWESIAKASAASFNHPLFAASAPTSPSHRHLYAPPTIPECDESDTSTVESGQWLNFQAFANAAKSVSPTLNFMKPVINEQHNMVPDSRMQEMRISEPEFGVQVVKPWVGERIHEVGLDDLELTLGNGKAPS 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05564 313 MobiDBLite consensus disorder prediction 92 132 - -
Trre5g05564 313 MobiDBLite consensus disorder prediction 1 31 - -
Trre5g05564 313 MobiDBLite consensus disorder prediction 77 132 - -
Trre5g05564 313 Pfam BES1/BZR1 plant transcription factor, N-terminal 12 139 IPR008540 -
Trre5g05564 313 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 7 310 IPR033264 GO:0003700|GO:0006351|GO:0009742
Trre5g05564 313 MobiDBLite consensus disorder prediction 14 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05564 Trre-Chr5 56028858 56030633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05564 13 311 BZR Transcription Factor Family AT1G75080 65.094 6.35e-110 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Trre5g05564 BES1_N 5.8e-57 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05564 K14503 - gmx:100803869 415.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05564 5 56028858 56030633 Trre5g05564 5 56028858 56030633 ECH
Trre1g00224 1 1622470 1623663 Trre5g05564 5 56028858 56030633 PCT