Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05557 ATGCAATCTCAACCAAATCCAAAACCACCATTCCAATTCTTAATCATCCCCATCCTATTATTCTTACTACTACCTTCTTTTTCATTCTCTTCCACTCAATTCAAAGAAGCACCTGAATTCTACAATTCCCCAGAATGCCCTTCTTCAAATTCAACATCAACAGTAGTTCAAGTAGCAATGACACTCGACACAACATACATCCGAGGTTCCATGGCAGCAATTTTATCAATTCTTCAACACTCTTCATGTCCACAAAACATCTTCTTCCACTTCGTTTGTTCCTCAAACGAATCAAATCTACGCGCTGCAATCATCACCTCTTTTCCTTATCTTAAATTCAATCTTTACACCTTCGACGACAACACCGTCACCGGTCTCATCTCAACCTCCATTCGTTCCGCTCTTGATTGTCCTCTCAACTATGCTCGTAGCTACTTACCGAATCTCTTACCACTTTCCGTTAACCGTGTTGTTTATCTCGATTCCGATCTTATTCTTGTTGATGACATTGCAAAACTAGCAGAAACACCGTTAGGAGAAAACTCTGTTTTAGCAGCACCTGAATATTGTGTTATGGTGATTGATTTGGAACGTTGGAGAGAAGGTGATTATACTAGGAAAATTGAAGATTGGATGGAGTTACAGAAAAGAATGAGAATCTATGAATTGGGTTCTTTGCCTCCTTTTTTGCTTGTTTTTGCTGGGAATATTGCTCCTGTGGATCATAGATGGAATCAACATGGACTTGGTGGTGATAATTTTCGTGGTTTATGTAGAAATCTTCATCCTGGTCCTGTGAGTTTGTTGCATTGGAGTGGTAAAGTTGAGAGATGGTTGAATTTGAATCAATGGTTGGTCCGGTGGTATTGGCTTGTGCTCCTCCGCAAGGTCTCAAGTTAA 900 0.4 MQSQPNPKPPFQFLIIPILLFLLLPSFSFSSTQFKEAPEFYNSPECPSSNSTSTVVQVAMTLDTTYIRGSMAAILSILQHSSCPQNIFFHFVCSSNESNLRAAIITSFPYLKFNLYTFDDNTVTGLISTSIRSALDCPLNYARSYLPNLLPLSVNRVVYLDSDLILVDDIAKLAETPLGENSVLAAPEYCVMVIDLERWREGDYTRKIEDWMELQKRMRIYELGSLPPFLLVFAGNIAPVDHRWNQHGLGGDNFRGLCRNLHPGPVSLLHWSGKVERWLNLNQWLVRWYWLVLLRKVSS 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05557 299 PANTHER GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN 17 190 - -
Trre5g05557 299 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 57 297 IPR029044 -
Trre5g05557 299 SUPERFAMILY Nucleotide-diphospho-sugar transferases 57 293 IPR029044 -
Trre5g05557 299 Pfam Glycosyl transferase family 8 58 188 IPR002495 GO:0016757
Trre5g05557 299 Pfam Glycosyl transferase family 8 191 280 IPR002495 GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05557 Trre-Chr5 55986601 55987822 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05557 12 283 Glycosyltransferase AT3G50760 58.280 3.30e-126 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05557 K20893 - gmx:100802240 416.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05557 5 55986601 55987822 Trre5g05557 5 55986601 55987822 ECH
Trre1g00235 1 1721985 1722980 Trre5g05557 5 55986601 55987822 PCT