Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05545 ATGTCCGCTCCAGGTGTACAGTTACACATCCAACAACACCATGTGGTGATGGATAATGGAATAGTCCAAGTTACATTATCAAATCCAGGTGGAATTGTTACTGGAATCCGATATAATGGTGTTGACAATTTGCTCGAAGTTCTCAATAAGGAGACTAATAGAGGGTATTGGGATCTTGTTTGGAGTGCACCAGGAATCAAAGGATATTTTGATGTGATTAATGGAACATGTTTTGAAGTTATAGTTCAAAATGAGGATCAGGTGGAGCTTTCATTCAAGAGAATGTGGGATCATTCTCTTGAGGGAAAGTTTGTCCCCTTAAACATTGACAAAAGATTCATTTTGCTCCGTGGTTCATCAGGATTCTACTCTTATGGAATTTATGAGCACTTACGAGGATGGCCAGATTTTGATATGAGTGAAACAAGGATCACTTTCAAGCTCAGAAAAGACAAGTTTCAGTACATGGCTATGGCAGACGATAGGCGAAGGGTTATGCCTTTTCCGGAGGATCGATTACCAGGAAGATGCCAACCCTTGGCCTACCAAGAAGCTGTCCTACTAGTCAATCCTAAGGATCCACAATTGAAAGGAGAGGTGGATGACAAGTATCAATATTCATGCAAGAACATAGATAATCGAGTCCATGGGTGGATATCTTTCAATCCACCTGTAGGATTCTGGCAGATCACACCTAGTGACGAGTTTCGTTCTGGTGGACCCTTCAAGCAGAATTTGACCTCGCATGTAGGACCCACCACACTTGCCATGTTTCTTAGTGGTCACTATGCCGGACAAGATTTGGTACCCAAAATCAGAGGTGGTGAACCATGGAAGAAGGTTTTTGGTCCTGTATATATTTATCTCAATTCTGGATCAACTGGTGATGACCCACTTTGGCTATGGGAGGATGCAAAAATAAAGATGATGAATGAAATTCAAAGTTGGCCATATTTATTCCCCGCTTCTGAGGATTTTTTAAAACCAGATCAACGAGGCAACGTCAGCGGCAGATTACTTGTCTTAGACAGGTACATCAGCACTGACTTAATATCAGCAAATGGCGCTTATGTTGGTCTAGCTCCACCGGGAGATGCAGGGTCATGGCAAAGAGAATGCAAGGACTATCAATTCTGGACCAGAGCAGACGTGAATGGATTTTTTACGATTAGCAATGTACGTCCAGGTGACTACAACCTTTTTGCCTGGGTACCTGGTTTTGTTGGAGACTACAGATTTGGTGATTCTGTGAAGATAACCTCAGGTTCTTACATTGAATTGGGGGAAATTGTATTCGAACCTCCAAGGGATGGCCCCACATTGTGGGAAATAGGTATTCCTGATAGATCCGCCGCAGAATTTTATGCTCCTGATCCCAATCCACAGTATATAAATAAGATTTTTATCAACCATCCAGAGAGGTTCAGGCAGTATGGATTGTGGGAAAGATATTCAGAGTTATATCCGGATGCAGATTTGGTTTACACAATTGGTGTTAGTGACTACAGGAAGGATTGGTTTTACGCTCAGGTTCCCAGAAAAAAAGCGGATAACACTCATGAAGGAACAACTTGGCAAATCAAGTTTGAACTCGGTGGTGTTATTCAAGGAACTGTATATAAACTAAGAGTTGCAATTGCATCTGCAACATTAGCTGAATTGCAGATTCGAGTCAATGACCCCAATGCAAGGCGTCCCGTATTTACCACTGGATTAATAGGAAGGGAAAACACAATTGCAAGACTAGGAATTCATGGACTCTATTGGCTGTACCATGTGAATATACCAAGTTCTCTTTTTATTGATGGCACAAATATTATATATTTTACACAGCCAAGATGCACCAGTCCTTTCCAGGGTTTCATGTATGACTATATTCGTTTGGAGGGCCCACCTTGTTCTTAA 1905 0.4168 MSAPGVQLHIQQHHVVMDNGIVQVTLSNPGGIVTGIRYNGVDNLLEVLNKETNRGYWDLVWSAPGIKGYFDVINGTCFEVIVQNEDQVELSFKRMWDHSLEGKFVPLNIDKRFILLRGSSGFYSYGIYEHLRGWPDFDMSETRITFKLRKDKFQYMAMADDRRRVMPFPEDRLPGRCQPLAYQEAVLLVNPKDPQLKGEVDDKYQYSCKNIDNRVHGWISFNPPVGFWQITPSDEFRSGGPFKQNLTSHVGPTTLAMFLSGHYAGQDLVPKIRGGEPWKKVFGPVYIYLNSGSTGDDPLWLWEDAKIKMMNEIQSWPYLFPASEDFLKPDQRGNVSGRLLVLDRYISTDLISANGAYVGLAPPGDAGSWQRECKDYQFWTRADVNGFFTISNVRPGDYNLFAWVPGFVGDYRFGDSVKITSGSYIELGEIVFEPPRDGPTLWEIGIPDRSAAEFYAPDPNPQYINKIFINHPERFRQYGLWERYSELYPDADLVYTIGVSDYRKDWFYAQVPRKKADNTHEGTTWQIKFELGGVIQGTVYKLRVAIASATLAELQIRVNDPNARRPVFTTGLIGRENTIARLGIHGLYWLYHVNIPSSLFIDGTNIIYFTQPRCTSPFQGFMYDYIRLEGPPCS 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05545 634 FunFam Rhamnogalacturonate lyase B 328 427 - -
Trre5g05545 634 CDD RGL4_N 14 297 - -
Trre5g05545 634 SUPERFAMILY Starch-binding domain-like 374 429 IPR013784 GO:0030246
Trre5g05545 634 Gene3D - 5 307 IPR014718 GO:0030246
Trre5g05545 634 Pfam Rhamnogalacturonate lyase family 8 200 IPR010325 -
Trre5g05545 634 Pfam Polysaccharide lyase family 4, domain III 440 628 IPR029411 -
Trre5g05545 634 SUPERFAMILY Galactose-binding domain-like 437 629 IPR008979 -
Trre5g05545 634 CDD RGL4_C 442 629 - -
Trre5g05545 634 Pfam Polysaccharide lyase family 4, domain II 354 426 IPR029413 -
Trre5g05545 634 SUPERFAMILY Galactose mutarotase-like 16 296 IPR011013 GO:0003824|GO:0005975|GO:0030246
Trre5g05545 634 Gene3D - 329 427 - -
Trre5g05545 634 Gene3D - 438 629 - -
Trre5g05545 634 CDD RGL4_M 331 430 IPR029413 -
Trre5g05545 634 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 10 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05545 Trre-Chr5 55880929 55885635 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05545 1 632 Polysaccharide Lyase AT1G09910 69.778 0.0 948
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05545 K18195 - gmx:100814185 1202.58