Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05544 ATGCCTCCGCTAGGGGTGCAACTCAGCATTCAAGATCATCATGTGGTGATGGACAATGGAATACTCAAAGTCACTTTATCAAATCCTGAGGGAATTGTCACTGGAATAGAGTACAATGGGATTGACAACTTGCTTGAAGTGTTGAATGAAGAATCTAATAGAGGGTATTGGGACCTTGTTTGGAGCTCACCAACAAGTATAGGAACCACTGGAATATTTGATGTGATAAAGGGGAGCACATTCAAAGTTATATTGGAAGATGAGGATCAAGTGGAGTTATCCTTCTCCAGGAATTGGGATGCCTCCATGGAGGGCAAGATGGTTCCTTTAAATATTGATAAAAGGTTCATAATGCTTCGTGGTTCATCCGGCTTCTACTCATATGCAATTTATGAGCACTTGGAGGACTGGCCTGCTTTCAATCTTGATGAAACAAGAATTGCTTTCAAGCTTAGAAAAGACAAATTTCATTATATGGCAATGGCAGATAATAGACAGAGAAATATGCCTCTTCCAGATGACAGAGTACCTCCAAGAGGCCAAGCATTTGCCTATCCAGAAGCAGTTCTACTTGTCAATCCTATAGAACCAGAACTTAAAGGAGAGGTGGATGATAAGTACCAATATTCATGTGATAACAAAGATAGCCAAGTTCATGGATGGATTTGCATGGATCCTGCTGTTGGATTCTGGCTTATTACGCCTAGCAATGAATTTCGATCGGGTGGACCCGTCAAACAAAACTTAACTTCCCATGTGGGACCTACCACACTTGCTGTTTTTCTCAGTGCTCATTATAGTGGAGAAGATTTAGTGCCTAAGTTCAAAGCTGGTGAGGCTTGGAAAAAGGTTTTTGGTCCAGTTTTTATCTATGTCAATTCTCCATATTATGGCAGTGATCCAATTAAGCTATGGGATGACGCTAAACTTCAGATGTTAATGGAAGTTCAAAGTTGGCCCTACAATTTTCCCGAATCAGATGATTTCCCAAAATGGGACGAACGTGGTAATGTTAGTGGCAGACTATTGGTTAAAGAGAGGTATTTAGACGATGATGACTATTTATCAGCGAAATGTGCTTATGTCGGCTTGGCTACACCAGGAGATGTGGGATCTTGGCAAAGAGAATGCAAGAATTATCAATTTTGGACTCAAGCAGACGATGATGGCTATTTCTCCATCAGCAATATACGTGCTGGCGACTATAATGTTTATGCATGGGTACCTGGTTTTATCGGTGATTATAAATATGATGTAGTAGTTAGCATAACAGAAGGTTGTGACATAGACATTGGTGATCTTGTTTATGAGCCACCAAGAGATGGTCCAACATTGTGGGAAATAGGCATCCCCGATCGTTCGGCTGCTGAGTTCTATGTTCCTGATCCAAATCCCAAATATATCAACAAACTTTATGTTAATCATCCTGACAAGTTTAGGCAATATGGGATATGGGAGAGATATGCAGAACAATACCCTGACAAAGATTTGGTCTACACAATTGGTGTTAGTGACTACACAAAAGATTGGTTCTTTGCTCAAGTTACTAGGAAGAAAGATGATAATACATATCAAGGAACCACATGGCAAATCAAGTTTAAGCTTGATAATGTGAACAAAAAAGGTAGCTATAAACTTCGAGTTGCTTTGGCATCAGCTACATATTCAGAACTTCAGGTACGAGTTAATGATCCCAGAGCAAATAGGCCTTTATTTTCAAGTGGATTGATAGGAAAGGATAATTCAATTGCTAGGCATGGAATTCATGGACTTTATTGGCTTTATAATGTGAACATACCTGGTAATTTACTTGTTGAAGGAGATAATAATAATACCATCTTTTTGACACAATCAAGAGGCAATGGTCCATTTCAGGCCATTATGTATGATTATATTCGTTTGGAAGGCCCACCAACTTCTAATTTCAATAAGAAAATTTGA 1941 0.3926 MPPLGVQLSIQDHHVVMDNGILKVTLSNPEGIVTGIEYNGIDNLLEVLNEESNRGYWDLVWSSPTSIGTTGIFDVIKGSTFKVILEDEDQVELSFSRNWDASMEGKMVPLNIDKRFIMLRGSSGFYSYAIYEHLEDWPAFNLDETRIAFKLRKDKFHYMAMADNRQRNMPLPDDRVPPRGQAFAYPEAVLLVNPIEPELKGEVDDKYQYSCDNKDSQVHGWICMDPAVGFWLITPSNEFRSGGPVKQNLTSHVGPTTLAVFLSAHYSGEDLVPKFKAGEAWKKVFGPVFIYVNSPYYGSDPIKLWDDAKLQMLMEVQSWPYNFPESDDFPKWDERGNVSGRLLVKERYLDDDDYLSAKCAYVGLATPGDVGSWQRECKNYQFWTQADDDGYFSISNIRAGDYNVYAWVPGFIGDYKYDVVVSITEGCDIDIGDLVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYVNHPDKFRQYGIWERYAEQYPDKDLVYTIGVSDYTKDWFFAQVTRKKDDNTYQGTTWQIKFKLDNVNKKGSYKLRVALASATYSELQVRVNDPRANRPLFSSGLIGKDNSIARHGIHGLYWLYNVNIPGNLLVEGDNNNTIFLTQSRGNGPFQAIMYDYIRLEGPPTSNFNKKI 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05544 646 Gene3D - 4 307 IPR014718 GO:0030246
Trre5g05544 646 Gene3D - 333 430 - -
Trre5g05544 646 FunFam Rhamnogalacturonate lyase B 331 431 - -
Trre5g05544 646 SUPERFAMILY Galactose mutarotase-like 11 299 IPR011013 GO:0003824|GO:0005975|GO:0030246
Trre5g05544 646 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 11 638 - -
Trre5g05544 646 CDD RGL4_M 334 434 IPR029413 -
Trre5g05544 646 Gene3D - 442 635 - -
Trre5g05544 646 Pfam Rhamnogalacturonate lyase family 8 203 IPR010325 -
Trre5g05544 646 SUPERFAMILY Galactose-binding domain-like 441 635 IPR008979 -
Trre5g05544 646 CDD RGL4_N 8 294 - -
Trre5g05544 646 SUPERFAMILY Starch-binding domain-like 371 430 IPR013784 GO:0030246
Trre5g05544 646 CDD RGL4_C 446 635 - -
Trre5g05544 646 Pfam Polysaccharide lyase family 4, domain III 444 634 IPR029411 -
Trre5g05544 646 Pfam Polysaccharide lyase family 4, domain II 358 430 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05544 Trre-Chr5 55875176 55879583 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05544 1 637 Polysaccharide Lyase AT1G09890 71.205 0.0 947
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05544 K18195 - gmx:100793563 1222.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05544 5 55875176 55879583 Trre5g05544 5 55875176 55879583 ECH