Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05542 ATGAACTTGGTTAATCTTTTCATGTTTTTGATGTTTCAATTCATCTTGTTTCTGGGTTGTAGTAGCATTGATTCAGGGGTGCGATTGGATATTCAAGAAAAACATGTGATTATGGATAATGGTATAGTACAAGTGAATTTATCAAACCCAGAAGGATTTGTCATTGGAATTCAATATAATGGACTTGATAATTTGCTTGAAGTTCTCAATCCCGAATTTGACAGAGGGTATTGGGATATTGTATGGGACCAAGGTGGAAAAAATAGAACAAAAAAAGGTGCAAAGGGAAAGGGTAAACTCGACAGGATGGATACCACAAATTTGACGGTGATAGTAGAAAATGAAGAACAAGTAGAGCTATCTTTCACTAGAACATGGAATTTCTCTCTTGAAGGAAAGTTTGCACCACTCAATATTGATAAAAGGTTTATAATGCTTCGTGGTTCCTCTGGATTTTATACATATGCAATTTATGATCATTTGAAGGAATGGCCTGCATTTGATCTTGACAATACTAGAGTTGCATTCAAACCTAGGAAAGACAAGTTCAATTACATGGTTATAGCGGACGACAGACAAAGATTTATGCCGTTGCCTGATGATCGGTTACCGGGAAGAGGTCAAGTTCTGGCTTACCCAGAGGCTGTCCGCCTTGTCAATCCGGTGGAGCCGGAGTTTAAAGGAGAGGTGGATGATAAATACGAGTACTCAATTGAGAGTAGGAACAACTATGTACATGGTTGGATTTCCATTCATTCATCGAAATCTACTGGAATATGGCTAATTACACCAAGCTATGAGTTTAGATCTGCTGGACCTTTAAAACAATACCTTGCTTCCCACACTGGGCCAACCATGCTCTCCGTATTTCATAGCACACATTATTCAGGGACAGATCTAATAATGAAATTTGGAGCCAATGAGGCGTGGAAGAAAGTTTTTGGGCCTATATTCATATACCTTAATTCCATGTCTGATGGGCTTAGCCCAATAAGACTCTGGGAGGACGCCAAACAACAGATGGTGAATGAAATTGAAAGCTGGCCATATACATTCCCTGCTTCTAAGGACTTTCTCTCATCTGCCCAACGAGGTAAAGTTGAAGGTAGATTGCTTGTCCGTGATAGGTACATAAGTGACGCATTTGTCCCAGTGAGTGGTGCTTATGTTGGATTAGCTCCCCCAGGAGATGTTGGATCTTGGCAAAGAGAATACAAGGGTTATCAATTTTGGACTATTACTGATGATAAAGGCTATTTTTCAATAATTAACATACGTCCTGGTGACTATAATCTTTATTCATGGGTCACTGGATTCATTGGTGATTATCAATATAAAAATGTCATTAACATAACCTCAGGTTGTGAAATTAAGGTGGGTGAGCTTGTTTATGAGCCACCAAGAGATGGTCCAACATTGTGGGAAATCGGCATTCCTGATCGAACAGCTGCTGAGTTCTATGTTCCTGATCCAAATCCCTTGTACGTTAACAGACTTTACATCAACCATTCAGACAGATATAGGCAATATGGCTTGTGGGAGAGATATGCTGATTTGTACCCAAATGAAGACCTAGTTTACAATGTTGGCATTAGTGATTACAAAAAAGACTGGTTTTTTGCTCAAGTTACCAGGAAAAAGGACAACAACACTTACCAAGGAACTACATGGAAAATTAATTTCAATCTTGATCATCTGAATACAAATGGAACCTACAAATTGCGACTAGCTCTAGCATCTGTACATAATGCTGAGTTAGAGATTCGCATAAACAATTCAAATGCAACAAGTCCACCTTTATTTTTGAGTGGAATTATTGGAAAGGAGAATACTATAGCAAGACATGGAATTCATGGATTCTACTGGTTATTCAACATTGATGTAAAAGGCACTCTTCTTGTGAAAGGAAACAATACAATCTTTCTAACACAAGCTAGCAACAATGGTCCTTTTGTAGGAGTTTTGTATGATTATATTCGTTTTGAAGGACCCCCTGATATTAATTTTAATAAAGATCAAAACTAG 2025 0.3817 MNLVNLFMFLMFQFILFLGCSSIDSGVRLDIQEKHVIMDNGIVQVNLSNPEGFVIGIQYNGLDNLLEVLNPEFDRGYWDIVWDQGGKNRTKKGAKGKGKLDRMDTTNLTVIVENEEQVELSFTRTWNFSLEGKFAPLNIDKRFIMLRGSSGFYTYAIYDHLKEWPAFDLDNTRVAFKPRKDKFNYMVIADDRQRFMPLPDDRLPGRGQVLAYPEAVRLVNPVEPEFKGEVDDKYEYSIESRNNYVHGWISIHSSKSTGIWLITPSYEFRSAGPLKQYLASHTGPTMLSVFHSTHYSGTDLIMKFGANEAWKKVFGPIFIYLNSMSDGLSPIRLWEDAKQQMVNEIESWPYTFPASKDFLSSAQRGKVEGRLLVRDRYISDAFVPVSGAYVGLAPPGDVGSWQREYKGYQFWTITDDKGYFSIINIRPGDYNLYSWVTGFIGDYQYKNVINITSGCEIKVGELVYEPPRDGPTLWEIGIPDRTAAEFYVPDPNPLYVNRLYINHSDRYRQYGLWERYADLYPNEDLVYNVGISDYKKDWFFAQVTRKKDNNTYQGTTWKINFNLDHLNTNGTYKLRLALASVHNAELEIRINNSNATSPPLFLSGIIGKENTIARHGIHGFYWLFNIDVKGTLLVKGNNTIFLTQASNNGPFVGVLYDYIRFEGPPDINFNKDQN 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05542 674 CDD RGL4_C 474 662 - -
Trre5g05542 674 Gene3D - 470 661 - -
Trre5g05542 674 Pfam Rhamnogalacturonate lyase family 26 230 IPR010325 -
Trre5g05542 674 Gene3D - 360 459 - -
Trre5g05542 674 Pfam Polysaccharide lyase family 4, domain II 386 458 IPR029413 -
Trre5g05542 674 Gene3D - 141 323 IPR014718 GO:0030246
Trre5g05542 674 SUPERFAMILY Galactose-binding domain-like 469 662 IPR008979 -
Trre5g05542 674 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 32 665 - -
Trre5g05542 674 SUPERFAMILY Starch-binding domain-like 361 456 IPR013784 GO:0030246
Trre5g05542 674 FunFam Rhamnogalacturonate lyase B 360 459 - -
Trre5g05542 674 CDD RGL4_M 363 462 IPR029413 -
Trre5g05542 674 CDD RGL4_N 35 323 - -
Trre5g05542 674 Pfam Polysaccharide lyase family 4, domain III 472 660 IPR029411 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05542 Trre-Chr5 55864319 55869161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05542 25 664 Polysaccharide Lyase AT1G09890 63.297 0.0 848
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05542 K18195 - gmx:100786488 1130.55