Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05541 ATGAATTGGGTTCGTGGCGACTTATTAGGTAGCGGAAGTTTTGCCACAGTCAACATAGCTACACACACAAACAATTTCAATAATTTTCCCTCTATCACCGCCGTCAAATCCTCCGATACTTACTATTCTCATTTGCTCCAAAATGAGAAACAAATCCTCGATTGTTTAGGATCATCTCCGCATATTATCAAGTGTTTTGGTGACGATCACACTTTTGAAGACGGTGAAGAGGGTTATAATATTTTCTTAGAATATGCCGCCGGTGGTACTCTCTCCGATCAACTCAAGAATTATGGTGGTAAGTTACCTGAAACCCTCGTTCGTCGTTACACGAGGTCTGTTCTTAAAGGACTTAAGCATGTTCATGAAAACGGTTTTGTTCACTGTGACGTGAAGCTACAAAACATTCTTGTATTGGAGGATGGCAATGTTAAGATTTCGGATTTTGGTCTTGCAAAGAAGAAAGGTTTAAAGAACAATGGAAAATTGGAATGTAGGGGAACTCCGATGTTTATATCGCCGGAAGTAGTGAACAATAGTGTTTATGAATCGCCAGGAGATATATGGGCTCTTGGTTGCGCGGTAGTGGAGATGGTTACAGGAAAACCTGCATGGAATTTTAGTGGATCGAATATATGGTCCTTGTTGATTAGAATTGGGGTAGGGGAAGAATTACCATTGATTCCAGATGAATTATCGCACGAGGGAAAAGATTTTCTTCAAAAAATATTCGTGAAGGATCCGTTGAAAAGATGGACTGCAGAGATGCTTTTGAAACATTCTTTTATCACCAATGATAAAAATATTTCATTGGTGAAAGATTTAATTAATGAGTCTTCGTCATTGCAATCAACATCTCCAAGAACACACTTCGATTTTCCTATAGAATTTGAGCACGATTTTTGTTCGTCGGAAGAAAGACTTCAACAACTAGTCGAAGATCAAAGATTATAA 954 0.3847 MNWVRGDLLGSGSFATVNIATHTNNFNNFPSITAVKSSDTYYSHLLQNEKQILDCLGSSPHIIKCFGDDHTFEDGEEGYNIFLEYAAGGTLSDQLKNYGGKLPETLVRRYTRSVLKGLKHVHENGFVHCDVKLQNILVLEDGNVKISDFGLAKKKGLKNNGKLECRGTPMFISPEVVNNSVYESPGDIWALGCAVVEMVTGKPAWNFSGSNIWSLLIRIGVGEELPLIPDELSHEGKDFLQKIFVKDPLKRWTAEMLLKHSFITNDKNISLVKDLINESSSLQSTSPRTHFDFPIEFEHDFCSSEERLQQLVEDQRL 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05541 317 SUPERFAMILY Protein kinase-like (PK-like) 3 296 IPR011009 -
Trre5g05541 317 Gene3D Transferase(Phosphotransferase) domain 1 2 315 - -
Trre5g05541 317 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Trre5g05541 317 ProSiteProfiles Protein kinase domain profile. 3 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g05541 317 CDD STKc_MAPKKK 2 263 - -
Trre5g05541 317 Pfam Protein kinase domain 6 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g05541 317 SMART serkin_6 3 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g05541 317 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 284 - -
Trre5g05541 317 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05541 Trre-Chr5 55859840 55860793 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05541 1 315 MAP Kinase Kinase Kinase AT5G67080 51.818 7.65e-112 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Trre5g05541 Pkinase 3e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05541 - - gmx:100797177 422.165