Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05534 ATGGAATTCTATGATGAGAATTTCATGGAGGAATTAATGGCTCTAAGAAGAGAAACATATGAAATTACAAATCCAAGTCAAGAAGAAAATCAATTCTTCTCATCAACAACAACTAATAGCTTAAGTTTTGATAACTGTTTTGATCAAAACTCTTTATCTTATCTACCAAACTCTTCTTGTAGTCAACAACTTCCTCAAAGTTACATCAACAATGATCACTACAGTAACACTTTTAATGAAATCTATGGCTCTTTACTTGATGAATCTTCGACACCGCAGATTTTCGATTCATACTATAATAGTACCACGGACGCGCCATTTATTTCTCAAGAAGATTTTCCTTTGTCCATGATGGGAGAAGAAGAAGATCATCAAAGTTTGCTTGGTGAAGAGCTTCAAAATTTGGAGCTGCAAACAACATGCAAAATGGAGCCAACACAATCACCTGAAATGCCTATAGTTTTCAACAATGGTACTAGTTTGGAGAGAAAGAACCGAGCGAAGAAACTACAAGGACAACCGTCGAAAAACCTAATGGCTGAGAGGAGAAGACGAAAGAGATTAAACGATCGTCTTTCAATGCTACGAGCAATTGTCCCTAAGATAAGCAAGATGGACAGAACAGCTATACTTGGAGATACTATTGATTACATGAAAGAGCTTCTAGAGAAAATCAACAATCTGCAACAAGAAATTGAACTAGATTCAAATATGACAAGCATTGTCAAAGACGTAAAGCCAAATGAAATCTTAATCAGAAACTCTCCTAAGTTTGAGGTGGAGAGGAGTGGAGATACAAGGGTTGAAATTTGTTGTGCAGGGAAGCCAGGGTTGTCACTATCAACAGTAAACACATTAGAAGCATTAGGCCTTGAGATTCAACAATGTGTTATTAGCTGTTTCAATGATTTCACAATGCAAGCTTCTTGTTCAGAGGAATTGGAGAGAAGGACAATGTTGAGTTCTGAAGATATTAAGCAAGCCTTATTCAGAAGTGCAGGGTATGGTGGAAGATGTTTGTGA 1023 0.3685 MEFYDENFMEELMALRRETYEITNPSQEENQFFSSTTTNSLSFDNCFDQNSLSYLPNSSCSQQLPQSYINNDHYSNTFNEIYGSLLDESSTPQIFDSYYNSTTDAPFISQEDFPLSMMGEEEDHQSLLGEELQNLELQTTCKMEPTQSPEMPIVFNNGTSLERKNRAKKLQGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTAILGDTIDYMKELLEKINNLQQEIELDSNMTSIVKDVKPNEILIRNSPKFEVERSGDTRVEICCAGKPGLSLSTVNTLEALGLEIQQCVISCFNDFTMQASCSEELERRTMLSSEDIKQALFRSAGYGGRCL 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05534 340 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 176 234 IPR036638 GO:0046983
Trre5g05534 340 Coils Coil 211 238 - -
Trre5g05534 340 Pfam Helix-loop-helix DNA-binding domain 178 221 IPR011598 GO:0046983
Trre5g05534 340 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 172 221 IPR011598 GO:0046983
Trre5g05534 340 SMART finulus 178 227 IPR011598 GO:0046983
Trre5g05534 340 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 56 335 - -
Trre5g05534 340 Gene3D - 161 237 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05534 Trre-Chr5 55789043 55790953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05534 163 340 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 65.385 4.59e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre5g05534 HLH 2.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05534 - - cam:101489960 538.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05534 5 55789043 55790953 Trre5g05534 5 55789043 55790953 ECH