Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05520 ATGCCGAATCCAGAAACTCACCGTCAACACAATCGCCAACCTCACCGTTCCAAAACTCGACCCTCATCTTCATCGGTTCGAACGAAACCTCGATCCAAATCCAGAGTTCCTCTTACGAAACTACTCCGAGTAGCGTCAGTTGCCGGTGGGATTCAATTTGGATGGGCTTTACAACTCTCTCTTCTAACTCCTTATGTTCAACAGCTCGGAATTCCGCATGCTTGGGCTAGCATTATTTGGCTCTGTGGGCCTCTTTCTGGGCTTCTTGTTCAGCCGTTGGTTGGTCATTTGAGTGATCGGTGTACCAGTAGATTCGGTCGTCGGAGACCGTTTATTTTCGGTGGAGCTGTGTCGATAGTTATATCTGTTCTTATTATTGGTCATGCTGCTGATTTGGGATGGAAATTTGGTGATACTAAAGAACATCGGCGTTCGGCTGTAGCGTTTTTTGTTTTCGGGTTTTGGATTTTGGATGTTGCTAATAATGTTACTCAAGGTCCTTGTAGAGCTTTGCTTGGTGATCTCACTGGTAAGGATCATCGAAGGACACGTGTCGCAAATGCTTATTTCTCCTTATTTATGGCTATTGGTAACATTCTTGGATATGCGACTGGATCATACAGCGGTTGGTACAAGGTCTTTCCTTTCACACTCACCCCTGCATGCAATATTAGCTGTGCGAATCTCAAGTCTGCTTTCTTTCTGGACACTATTTTCATTATCATCACCACCTATATCAGTATCATGGCAGCTAATGAGGTGCCTCTAGGGTCAAGTGCGGCAGCCAATGCTGAAGCAGCAGAGTCAGGTGGTAGTGCAGAAGAAGCTTTCCTGTGGGAGCTGTTTGGGACATTCAGATATTTTTCAAAGCCTATATGGGTAATATTGTCTGTTACCGCTCTAACATGGATTGGGTGGTTTCCATTTCTTCTATTCGATACCGATTGGATGGGCCGAGAAATTTATGGTGGTGAGCCAAATGGAGGCGCTTATTATGATACCGGAGTTAGAATGGGGGCGCTTGGTTTATTGCTTAATTCAGTCGTTCTTGGAATAACATCATTACTCATGGAGAGGCTATGCAGGAAGCGGGGGCCTGGGTTTGTGTGGGGAGTTGCAAACATCCTAATGGCCATCTGCTTTGTAGCAATGCTTATAGTAACCTATGTGGCAAATACCATTGGTTATTTAGGCAAAGATCTACCGCCCACTAGAATCGTGATATATGCACTGGCAATCTTTACCATTCTCGGGTTTCCACTGGCAATCACTTACAGTGTTCCATATGCCTTAATTTCGACGCATATTCAGTCATTGGGGCTTGGCCAAGGATTGTCAATGGGAGTCCTAAATCTTGCAATCGTGTTCCCACAGATGATAGTGTCCTTAGGAAGTGGACCATGGGATCAGTTATTTGGTGGAGGAAACTCTCCAGCCTTTGCTGTGGCAGCTGTTGCAGCCCTTGTTAGTGGACTCATAGCTGTCTTGGCTATTCCCCGAACCGGTGCTCAAAAGCCTAGAAGCCCAGTATGA 1533 0.4566 MPNPETHRQHNRQPHRSKTRPSSSSVRTKPRSKSRVPLTKLLRVASVAGGIQFGWALQLSLLTPYVQQLGIPHAWASIIWLCGPLSGLLVQPLVGHLSDRCTSRFGRRRPFIFGGAVSIVISVLIIGHAADLGWKFGDTKEHRRSAVAFFVFGFWILDVANNVTQGPCRALLGDLTGKDHRRTRVANAYFSLFMAIGNILGYATGSYSGWYKVFPFTLTPACNISCANLKSAFFLDTIFIIITTYISIMAANEVPLGSSAAANAEAAESGGSAEEAFLWELFGTFRYFSKPIWVILSVTALTWIGWFPFLLFDTDWMGREIYGGEPNGGAYYDTGVRMGALGLLLNSVVLGITSLLMERLCRKRGPGFVWGVANILMAICFVAMLIVTYVANTIGYLGKDLPPTRIVIYALAIFTILGFPLAITYSVPYALISTHIQSLGLGQGLSMGVLNLAIVFPQMIVSLGSGPWDQLFGGGNSPAFAVAAVAALVSGLIAVLAIPRTGAQKPRSPV 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05520 510 NCBIfam sucrose/proton symporter 36 501 IPR005989 GO:0005886|GO:0008515|GO:0015770
Trre5g05520 510 CDD MFS_SLC45_SUC 41 477 - -
Trre5g05520 510 PANTHER SUGAR TRANSPORTER 35 496 - -
Trre5g05520 510 MobiDBLite consensus disorder prediction 18 32 - -
Trre5g05520 510 Gene3D MFS general substrate transporter like domains 39 498 IPR036259 -
Trre5g05520 510 FunFam Sucrose transport protein 35 498 - -
Trre5g05520 510 Pfam MFS/sugar transport protein 56 203 - -
Trre5g05520 510 SUPERFAMILY MFS general substrate transporter 41 503 IPR036259 -
Trre5g05520 510 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05520 Trre-Chr5 55649441 55655179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05520 1 506 Sucrose Transporter Gene Family AT1G09960 69.080 0.0 683
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05520 K15378 - gmx:100787939 799.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05520 5 55649441 55655179 Trre5g05520 5 55649441 55655179 ECH