Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05514 ATGCTTTCCTCGCGACTTCTTTCTCTTCTCATCATTCTCTTCTCACTACTCACAATCGTCAAATCAAACGACCGTCAAATTATACTAAACCTAAAAACCTCCCTCCAAAATTCAAACAACACACTCTTCTTCAACTCATGGAATGAAAACACTTCAATTTGTAGTTTCAACGGAATCACCTGCAACTCATTTAATTCCGTTACAGAAATCAACCTTCCTAATAAATCTCTCTCAGGTATTCTTCCTATAGATTCACTCTGCAATCTTCAATCTCTCACAAAACTTGAATTAGGTTTCAATCATTTCAATGGCAGAGTCAATGAAAGCCTTAGAAACTGTGTCAATTTACAGTTCTTAGATTTAGGTAACAACTTTTTCTCTGGAACTTTTCCGGATATTTCACCTCTTCGTCATCTTCAATATCTCTATGTAAACAAAAGTGGTTTTTCTGGTACTTTTCCGTGGCAATCTCTGTTAAATATAACAAGTCTGTTACAGTTAAGCGTCGGTGACAATCCTTTCGATCTAACTCCGTTTCCTACAGAGGTGTTAAGTCTTAAGAAACTGAATTGGCTTTACATGAGTAACTGTAATCTTGGAGGAAAGTTACCGGTTGGACTCGGTAACTTAACGGAGTTAACTGAATTAGAATTCTCCGATAACTTTATTACCGGAGAACTTCCCGGTGATATAGTCAATCTTAAGAAACTCTGGCAGCTTGAATTTTACAACAATTCGTTAACCGGAGAAATTCCGATCGGGTTGAGAAACCTAACCGGACTAAACAATTTTGATGGATCAATGAATCAATTAGAAGGAAATCTCTCTGAAATTAGATTTTTAACCAATCTAGTTTCGCTACAACTCTTCGAAAATAGATTATCCGGCGAGATACCACCGGAGTTTGGCGAATTCAAAAACCTTGTGCAATTGTCTCTCTACAGAAACAATTTAACAGGTCCAATTCCTCAGAAGATTGGTTCATGGACAGAATTTCAATACATCGACGTTTCGGAGAATTTCTTAACAGGTTCAATTCCTCCAGATATGTGCAACAAAGGGAATTTGCTTTATCTTCTCGTGCTTCAGAATAACCTCACCGGTGAGATACCGGAAACTTACGGTACCTGTTCGAGTCTTCAAAGGCTCAGAGTGAGCAGAAACTCACTCTCAGGTACCGTTCCTTCCGGTATCTGGGGATTACCGATTGTTGAACTAATTGATATTGAATCGAATCAGTTCGAAGGTTCTGTTAGTTCAGAGATCCAAAATGCGAAGAAATTGGCAAGTATACTTGCAAGGAACAACCGGTTAACCGGTGAAATACCAAAAGAGATTTCAGAAACAAAAACGCTGGTGACAATTGATCTTAGCGAGAATCAAATTTCCGGGAACATTCCAGAAGGAATTGGAGAACTTAAACAACTTAGTATACTTTATTTACAGGGAAATAAATTCTCAGGGGTAATTCCGGAATCTTTGGGTTATTGTAAATCACTCAACAACGTTGATTTGTCGAGAAATTTACTTTCCGATGAAATTCCGGCGAGTTTGGGTTTCTTACCGGCTTTGAATTCTCTGAATTTCTCTCGGAATGAACTTTCCGGTGAAATTCCGAAGAGTTTAGGTTCGCTTAAGTTGAGTCTGTTTGATCTTTCGCATAATCGCTTATCCGGTGAAATTCCACAAGCTTTAACTATTCAAGCTTACAACGGAAGTCTCACCGGAAATCCACGTTTGTGCACGCTTGATGCTATTGGTTCTTTCCAGCGTTGTTCTGAGAGAAATGGAATGTCAAAAGACGTTCGTGCCCTTGTACTTTGTTTCATAGTAGCTTTGGTTTTGGTTCTTTGTTTTTTGGGTGTTTATTTGAAATTGCAGAAAATGAAGGGGAAAGAGGAAAAAAGAGAGGGAAATAAATATGGAAGAGAACGTTCTTTGAAGGAAGAATCATGGGATGTGAAATCGTTCCACGTGTTGAGTTTTAGTGAAGATGAGATTCTTGATTCTGTTAAGCAAGAGAATCTAATAGGAAAAGGAGGTTCAGGGAATGTTTATAGAGTATCACTTGCAAATGGAAAAGAACTTGCGGTTAAGCATATATGGAACACCGATTTCGGGTCAAGGAAAAAGTCGTGGAGCAGCACGCCGATTTTGGCAAAGCGTGTCGGTGGTGGTAGTTCGAGATCAAAGGAATTTGACGCGGAGGTTCAGGCGTTAAGTTCGATAAGACATGTGAATGTGGTGAAGCTTTATTGTAGTATAACTAGTGAGGATTCAAGTCTTTTGGTTTATGAGTATTTGCCTAATGGAAGTTTGTGGGATAGGCTTCATACTAATGGAAAGATGGAGCTTGATTGGGAAACAAGATATGAAATTGCGGTTGGTGCTGCTAAAGGGTTGGAGTATTTACATCATGGTTGTGAAAGGCCTGTGATTCATAGAGATGTTAAGTCTAGTAACATTTTGTTGGATGAGTTTCTGAAACCTAGAATTGCTGATTTTGGTCTTGCTAAGATTGTCAATGCTAATGCTATTAAGGATTCTACTCATATCATTGCCGGTACTCACGGCTACATCGCTCCCGAATATGGATACACATACAGAGTGAATGAGAAAAGTGATGTGTATAGTTTTGGAGTGGTATTGATGGAGTTGGTAACAGGTAAAAGGCCAAGTGAAACAGAATTTGGAGAAAACAAGGACATAGTTAGTTGGGTTCATGGAAAGACAAGGAGCAAGGAGAAGTTTATGAGTGTAGTCGATTCAAGAATTCCGGAGATGTATAAAGAAGAAGCTTGTAAGGTATTGAGAACTGCAGTTCTTTGCACTGCAACTCTTCCAGCTATGAGACCAAGTATGAGAGCTGTGGTTCAAAAACTTGAGGATGCTGCACCTTGTAAATTGGTTGGAATTGTTATTACTAAAGATGGAAGTGAAAAGAAAATTGGAGTCAATGACAAATGA 2967 0.3876 MLSSRLLSLLIILFSLLTIVKSNDRQIILNLKTSLQNSNNTLFFNSWNENTSICSFNGITCNSFNSVTEINLPNKSLSGILPIDSLCNLQSLTKLELGFNHFNGRVNESLRNCVNLQFLDLGNNFFSGTFPDISPLRHLQYLYVNKSGFSGTFPWQSLLNITSLLQLSVGDNPFDLTPFPTEVLSLKKLNWLYMSNCNLGGKLPVGLGNLTELTELEFSDNFITGELPGDIVNLKKLWQLEFYNNSLTGEIPIGLRNLTGLNNFDGSMNQLEGNLSEIRFLTNLVSLQLFENRLSGEIPPEFGEFKNLVQLSLYRNNLTGPIPQKIGSWTEFQYIDVSENFLTGSIPPDMCNKGNLLYLLVLQNNLTGEIPETYGTCSSLQRLRVSRNSLSGTVPSGIWGLPIVELIDIESNQFEGSVSSEIQNAKKLASILARNNRLTGEIPKEISETKTLVTIDLSENQISGNIPEGIGELKQLSILYLQGNKFSGVIPESLGYCKSLNNVDLSRNLLSDEIPASLGFLPALNSLNFSRNELSGEIPKSLGSLKLSLFDLSHNRLSGEIPQALTIQAYNGSLTGNPRLCTLDAIGSFQRCSERNGMSKDVRALVLCFIVALVLVLCFLGVYLKLQKMKGKEEKREGNKYGRERSLKEESWDVKSFHVLSFSEDEILDSVKQENLIGKGGSGNVYRVSLANGKELAVKHIWNTDFGSRKKSWSSTPILAKRVGGGSSRSKEFDAEVQALSSIRHVNVVKLYCSITSEDSSLLVYEYLPNGSLWDRLHTNGKMELDWETRYEIAVGAAKGLEYLHHGCERPVIHRDVKSSNILLDEFLKPRIADFGLAKIVNANAIKDSTHIIAGTHGYIAPEYGYTYRVNEKSDVYSFGVVLMELVTGKRPSETEFGENKDIVSWVHGKTRSKEKFMSVVDSRIPEMYKEEACKVLRTAVLCTATLPAMRPSMRAVVQKLEDAAPCKLVGIVITKDGSEKKIGVNDK 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05514 988 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 768 976 - -
Trre5g05514 988 Gene3D Ribonuclease Inhibitor 22 177 IPR032675 -
Trre5g05514 988 Gene3D Ribonuclease Inhibitor 278 364 IPR032675 -
Trre5g05514 988 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 354 596 - -
Trre5g05514 988 ProSitePatterns Protein kinases ATP-binding region signature. 677 699 IPR017441 GO:0005524
Trre5g05514 988 SUPERFAMILY L domain-like 270 591 - -
Trre5g05514 988 ProSiteProfiles Protein kinase domain profile. 671 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g05514 988 Gene3D Phosphorylase Kinase; domain 1 654 767 - -
Trre5g05514 988 FunFam Receptor-like protein kinase HAIKU2 654 767 - -
Trre5g05514 988 SMART serkin_6 671 968 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g05514 988 ProSitePatterns Serine/Threonine protein kinases active-site signature. 812 824 IPR008271 GO:0004672|GO:0006468
Trre5g05514 988 Pfam Leucine rich repeat N-terminal domain 23 62 IPR013210 -
Trre5g05514 988 FunFam Receptor-like protein kinase 7 106 353 - -
Trre5g05514 988 Gene3D Transferase(Phosphotransferase) domain 1 768 969 - -
Trre5g05514 988 SUPERFAMILY Protein kinase-like (PK-like) 664 961 IPR011009 -
Trre5g05514 988 SUPERFAMILY L domain-like 37 345 - -
Trre5g05514 988 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 207 962 - -
Trre5g05514 988 Pfam Protein kinase domain 673 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g05514 988 Gene3D Ribonuclease Inhibitor 365 467 IPR032675 -
Trre5g05514 988 Gene3D Ribonuclease Inhibitor 468 586 IPR032675 -
Trre5g05514 988 Gene3D Ribonuclease Inhibitor 178 277 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05514 Trre-Chr5 55616265 55619439 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05514 11 981 Receptor kinase-like Gene Family AT1G09970 59.119 0.0 1127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre5g05514 Pkinase 6.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05514 - - gmx:100779554 1493.79