Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05513 ATGACTCATCGTCAACCATTTTTCCTTTTTGGACTAATAGTTATGATTTCCATAACCAACATGTCACATGTTATCAGCACAAACCAGTCTGAGTTTTTTTCTGTTATGAAAGACTCTCTCTCAGGAAACTTCCCACTTGATTGGAGCACAAGCAAAGAAGATAAACCAATCTGCGAATTCACCGGAATCACATGTGACGACAAAGGAAACGTTATAAGTCTCGATTTTTCAGGTTGGTCATCGCTTTCCGGTAACTTCCCTTCAAATTTTTGCTCTTACCTTCCAAATTTACGCGTCATAAACCTCGGTTACACAAAATTCAAGTTTCCAACAAATAGTATAATCAACTGTTCTCACTTAGAACAACTCAACATGAACCATATGCACCAGTCAGGAACACTTCCCGATTTCTCGTCTTTAAAATCACTCAGAATTCTCGACTTATCCTATAACTCTTTCACCGGCGATTTCCCTGTGTCTGTTTTCAACCTCACAACTCTAGAAGTTCTCAATTTCAATGAAAACAGTAACTTCAATCTCTGGGAATTACCAAAAAACTTTGAAAGATTGAAAAATCTTAAGTCCATGGTTTTATCAACATGCATGTTGCATGGTCAAATTCCACCATCCATATCAAACATAACAACTCTTATTGATCTTGAATTAAGTGGAAATTTCCTCACAGGTCAAATTCCAAAAGAACTTGGTTTATTGAAAAACTTGCAACTGCTTGAACTTTACTATAACTTCAACCTTGTTGGTAACATTCCAGAAGAGCTTGGAAACTTAACTGATCTCGTTGATTTGGATATGTCGGTAAACAAGTTTACCGGAACAATCCCTTCTTCAGTTTTTAAGCTTCCTAAGCTTGAAGTTCTTCAGCTTTACAATAACAGTCTCAGTGGTGAAATATCAGATGCAGTTGAAAACTCAACAACACTTAGAATATTGTCTCTTTACGACAATTTCTTAACCGGACATGTTCCTGCGAAACTAGGACAATTCTCAGGAATGGTTGTTCTTGATTTGTCAGAAAACAGATTGTCTGGTCCTTTACCAGAACATGTCTGTAAAGGAGGTAAACTGCAATATTTTCTTGTTTTGGATAACTTTTTCTCTGGTGTTATACCAGAAAGTTATGAAAACTGCATGTTTCTGTTACGGTTTCGCGTCAGTAATAACCGTTTAGAAGGTTTTGTCCCAAAAGGACTGTTAAGTTTACAACATGTTTCAATCATTGATTTGAGTAGCAACAATTTGACTGGTCCGATTCCCGAGATTAACGGAAATTCTAGAAACTTGTCTGAACTTTTCCTTCAGAGGAACAAGATTTCAGGAGAAATAACTCCAACAATCTCTAGAGCTATTAACCTTGTCAAAATTGATTTCAGCTATAACTTTCTCTATGGTCCAATTCCTTCTGAAATTGGTAACCTTAGAAAGCTTAACTTGCTTATGCTACAAGCTAACAAGCTGAACTCAACTATTCCTGGTTCATTATCTTCCTTGGAATCACTTAACCTTCTAGATCTTTCCAATAACCACTTAACCGGAAACATCCCCGAAAGCCTCTCCGTGCTTTTGCCAAACTCCATTAATTTCTCACATAACCTTCTTTCTGGTCCTATTCCTCCTAAATTGGTTAAAGGAGGTTTAGTTGAAAGCTTTGCAGGAAATCCTGGTTTGTGTGTGATGATTCCGGTTAATGCTAATTCTTCTTCTGATCAGAAAAACTTTCCCTCATGTTCACATGGTTACAAGAGTAAGAAGATGAACACTATTTGGGTAGCTGGTGTGTCAGTGATTTTGATTTTTGTAGGTACTGCTTTGTTCTTGAAAAAAAGATGTAGCAAAGACGCGGCTGCGGTCGAACATGAGGACACACTCTCTTCATCCTTTTTCTCTTATGATGTTAGGAGCTTTCACATGATTAGTTTTGATCAAAGAGAGATTGTTGAGTCTTTGGTGGATAAGAATATAATGGGACATGGAGGGTCAGGGACAGTGTACAAAATCGAGCTAAAAAGCGGAGATATTGTCGCAGTTAAAAGGCTTTGGAGTCGAAGTTCAAAGGATTCGTCACCCGAAGATGCATTATTTGTGGACAAGGCATTAAAAGCTGAGGTGGAGACACTTGGAAGCATAAGACACAAAAACATAGTTAAGTTATATTGTTGCTTCTCAAGTTTGGATTGTAGCTTATTGGTTTATGAGTACATGCCAAATGGTACTTTGTATGATTCACTTCACAAAGGTTGGATTCATTTGGATTGGCCTACAAGGTATAAGATTGCACTTGGAATTGCTCAAGGTCTTGCATACCTTCACCATGATTTGGTTTTTCCTATTATCCATAGAGATATTAAGTCAACCAATATTCTCTTGGATGAAGATTACCATCCTAAGGTTGCTGATTTTGGTATTGCTAAGGTTTTACAAGCAAGAGGAGGAAAAGATTCCACAACCACTGTTATTGCAGGAACATATGGTTACTTAGCACCAGAATATGCATATTCACCAAGAGCAACTACAAAGTGTGATGTGTATAGTTTTGGTGTGATTTTGATGGAACTATTAACTGGAAGGAAACCAATTGAGTCAGAATTTGGAGAAAACAGAAACATAGTATTTTGGGTTTCAAACAAAGTAGAAGGCAAAGAAGGAGCTAGACCAAGTGAAGTTTTTGATCCAAAGTTATCATGTTCATTCAAAGATGATATGGTTAAAGTTTTGAGGATTGCTATTAGATGCAGTTACAAAGCACCAGCTAGTAGACCAACCATGAAAGAAGTTGTTCAGCTTCTCATTGAGGCAGAACCAAAAAGTTCTGATTCTTGCAAGTTGTCAACCAAAGATGCATCAACAAATGCTACTTTGGTAAAGAAATCATTTGAGTTATAA 2901 0.3713 MTHRQPFFLFGLIVMISITNMSHVISTNQSEFFSVMKDSLSGNFPLDWSTSKEDKPICEFTGITCDDKGNVISLDFSGWSSLSGNFPSNFCSYLPNLRVINLGYTKFKFPTNSIINCSHLEQLNMNHMHQSGTLPDFSSLKSLRILDLSYNSFTGDFPVSVFNLTTLEVLNFNENSNFNLWELPKNFERLKNLKSMVLSTCMLHGQIPPSISNITTLIDLELSGNFLTGQIPKELGLLKNLQLLELYYNFNLVGNIPEELGNLTDLVDLDMSVNKFTGTIPSSVFKLPKLEVLQLYNNSLSGEISDAVENSTTLRILSLYDNFLTGHVPAKLGQFSGMVVLDLSENRLSGPLPEHVCKGGKLQYFLVLDNFFSGVIPESYENCMFLLRFRVSNNRLEGFVPKGLLSLQHVSIIDLSSNNLTGPIPEINGNSRNLSELFLQRNKISGEITPTISRAINLVKIDFSYNFLYGPIPSEIGNLRKLNLLMLQANKLNSTIPGSLSSLESLNLLDLSNNHLTGNIPESLSVLLPNSINFSHNLLSGPIPPKLVKGGLVESFAGNPGLCVMIPVNANSSSDQKNFPSCSHGYKSKKMNTIWVAGVSVILIFVGTALFLKKRCSKDAAAVEHEDTLSSSFFSYDVRSFHMISFDQREIVESLVDKNIMGHGGSGTVYKIELKSGDIVAVKRLWSRSSKDSSPEDALFVDKALKAEVETLGSIRHKNIVKLYCCFSSLDCSLLVYEYMPNGTLYDSLHKGWIHLDWPTRYKIALGIAQGLAYLHHDLVFPIIHRDIKSTNILLDEDYHPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSPRATTKCDVYSFGVILMELLTGRKPIESEFGENRNIVFWVSNKVEGKEGARPSEVFDPKLSCSFKDDMVKVLRIAIRCSYKAPASRPTMKEVVQLLIEAEPKSSDSCKLSTKDASTNATLVKKSFEL 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05513 966 SUPERFAMILY L domain-like 252 566 - -
Trre5g05513 966 SUPERFAMILY Protein kinase-like (PK-like) 640 935 IPR011009 -
Trre5g05513 966 Gene3D Phosphorylase Kinase; domain 1 638 739 - -
Trre5g05513 966 Gene3D Ribonuclease Inhibitor 179 284 IPR032675 -
Trre5g05513 966 FunFam Receptor protein-tyrosine kinase CEPR1 287 574 - -
Trre5g05513 966 Gene3D Ribonuclease Inhibitor 286 574 IPR032675 -
Trre5g05513 966 PRINTS Leucine-rich repeat signature 338 351 - -
Trre5g05513 966 PRINTS Leucine-rich repeat signature 503 516 - -
Trre5g05513 966 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 251 936 - -
Trre5g05513 966 SUPERFAMILY L domain-like 69 352 - -
Trre5g05513 966 ProSiteProfiles Protein kinase domain profile. 655 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g05513 966 FunFam receptor protein-tyrosine kinase CEPR1 638 739 - -
Trre5g05513 966 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 740 953 - -
Trre5g05513 966 ProSitePatterns Serine/Threonine protein kinases active-site signature. 783 795 IPR008271 GO:0004672|GO:0006468
Trre5g05513 966 Gene3D Ribonuclease Inhibitor 29 178 IPR032675 -
Trre5g05513 966 Pfam Protein kinase domain 657 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g05513 966 FunFam Leucine-rich repeat receptor-like protein kinase 180 283 - -
Trre5g05513 966 SMART serkin_6 655 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g05513 966 SMART LRR_typ_2 335 359 IPR003591 -
Trre5g05513 966 SMART LRR_typ_2 503 527 IPR003591 -
Trre5g05513 966 SMART LRR_typ_2 479 502 IPR003591 -
Trre5g05513 966 SMART LRR_typ_2 287 311 IPR003591 -
Trre5g05513 966 SMART LRR_typ_2 140 164 IPR003591 -
Trre5g05513 966 Gene3D Transferase(Phosphotransferase) domain 1 740 961 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05513 Trre-Chr5 55592060 55595230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05513 26 941 Receptor kinase-like Gene Family AT5G49660 63.261 0.0 1163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre5g05513 Pkinase 7.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05513 - - lja:Lj1g3v2096140.1 1555.81