Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05478 ATGGTGGATGATGACAGTGACCAAGAGGATAATGATTATTCTTGTTTAGCTGAGTGGCAATTGATTCAGACACGGCTAAAGAGAGTTGATGATAGTATGAAGTGTGAAATCAGAAATCTGCTTCGTGAAATTGCGTGTCCTGAGTCGACATCATTGAAAGCTCCCAAAGACAAAGCAAGTTCTAAAGGGTCTTTCGGGTACATTCCACCGGAATATGCATATTCAACCAGGATTGATGTGAAAGTTGATGTGTATAGCTTTGGAGTTGTGCTGCTAGAGCTAGTGACAGGAAGAGAGCCTAATAATGGAGGCGAAAATACATGCAGTCTGGTTGATTGGGCATGGCAGCATTGTAATGAAGGGAAATGCATCACTGATGCCTTTGATAAGGTTATCAGAGAAACACGTTATACAGCAGAGATGACTTGCGTCTTCAAATTAGGCCTCATGTGCACAAGCACAGTACCCTCCACTAGGCCTTCCACAAAGGAGATTTTGCAAGTTCTTCGACAGTGCAGTTCAAGTTCTACACGTAAAAGGGTGGCAACCGAGTTTGATATCACTCCTCTTCTTGGCAATACAACTTACATTTCCAGTTACAAGGATAGCAGGACAGTGAGTGAAAATGAAGAAAGCTGCTTATATAGTGTGTGA 654 0.4235 MVDDDSDQEDNDYSCLAEWQLIQTRLKRVDDSMKCEIRNLLREIACPESTSLKAPKDKASSKGSFGYIPPEYAYSTRIDVKVDVYSFGVVLLELVTGREPNNGGENTCSLVDWAWQHCNEGKCITDAFDKVIRETRYTAEMTCVFKLGLMCTSTVPSTRPSTKEILQVLRQCSSSSTRKRVATEFDITPLLGNTTYISSYKDSRTVSENEESCLYSV 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05478 217 ProSiteProfiles Protein kinase domain profile. 1 191 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g05478 217 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 53 172 - -
Trre5g05478 217 Pfam Protein kinase domain 51 167 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g05478 217 Gene3D Transferase(Phosphotransferase) domain 1 28 191 - -
Trre5g05478 217 SUPERFAMILY Protein kinase-like (PK-like) 59 178 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05478 Trre-Chr5 55390961 55396124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05478 53 191 Receptor kinase-like Gene Family AT5G25930 58.273 1.08e-46 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre5g05478 Pkinase 1.1e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05478 - K00924 gmx:100790817 218.779