Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05471 ATGGCAACTGGTGGTGATTTCTTGAATGGTGTCGGTGGTGGTGTCAAGGATCACTATGGTGAGGATAGTGCTACAGAGGATCAACTTATCACACCATGGAATTTCTCTGTTGCTAGTGGACACACTTTGCTGAGAGATCCACGCTACAACAAAGGACTTGCCTTCACTGAGAAAGAAAGAGATTCTCATTATGTTCGTGGCCTTTTGCCTCCGGCTATCTTCACTCAAGAACTTCAGGAAAAGAGGTTGATGCACAATCTTCGTCAGTATGACGTGCCTCTTCACAAGTACATAGCCTTAATGGATCTTCAAGAGAGAAATGAAAGGCTGTTTTACAAGATTCTAATTGAAAACGTCGAAGAATTGCTTCCTGTTGTTTACACTCCAACAGTTGGAGAAGCCTGCCAGAAATATGGAAGCATTTATAGGCGTCCTCAGGGTCTATATATCAGTTTGAAGGAGAAAGGCAAGATCCTTGAGGTGCTTAAAAACTGGCCAGAAAAGACTATTCAAGTTATTGTTGTGACTGATGGTGAACGTATATTAGGACTAGGAGATCTCGGTTGCCAGGGAATGGGAATTCCTGTTGGAAAACTTTCTCTTTATACTGCATTAGGAGGTGTACGCCCTTCATCGTGCTTGCCTATAACCATTGATGTTGGAACAAACAACGAGAAGTTGCTGAATGATGAATTTTACATCGGCCTTAGGCAGAAGCGAGCAACTGGGAAGGAATATGCAGAGCTTCTAGAAGAGTTTATGCATGCAGTTAAGCAGAACTACGGGGAGAAAGTTCTTGTACAGTTTGAAGATTTCGCGAATCATAATGCATTCGAACTTCTCGATAAATATAGCTCATCTCATCTTGTTTTCAATGATGATATACAAGGTACAGCTTCTGTGGTATTAGCAGGATTGCTTGCTTCCCTTAAATTAATTGGGGGAACCTTAGCTGACCACACATTCTTATTCTTGGGAGCTGGAGAGGCTGGAACTGGTATAGCAGAGCTAATTGCTCTTGAGATTTCAAAGCAGACAAAAGCTCCAGTTGAAGAGACTCGCAAGAAGATTTGGCTTGTGGATTCCAAGGGTCTTATTGTTAGCTCTCGTCAGCAATCCCTTCAACACTTCAAAAAGCCTTGGGCTCATGAGCATGAACCTGTTAAGGACCTTCTAAATGCTGTCAAGGCAATCAAGCCAACTGTATTGATTGGAACATCTGGAGTAGGAAAGACATTTACCAAGGAGGTAGTTGAAGCCATGGCATCCTTGAATAAGAAACCTCTCATTTTTGCACTCTCCAACCCAACTTCACAATCTGAGTGCACAGCTGAAGAAGCTTATACATGGAGCAAGGGAAAAGCAATTTTTGCTAGTGGAAGTCCATTTGATCCTGTTGAATATGAAGGAAAAGTTTTTGTTCCTGGACAGGGAAACAATGCTTACATTTTTCCCGGCTTTGGTTTGGGTTTAATCATGTCTGGTGCAATCCGCGTGCGTGACGAAATGCTCTTGGCAGCCTCTGAAGCTTTGGCTTCACAAGTATCACAGGAGAACTATGATAAGGGACTGATATACCCTCCATTCACAAATATCAGAAAGATATCAGCTAACATTGCTGCTAGTGTTGCAGCCAAGACATACGAACTTGGTCTGGCTTCTCATCTACCTCGACCAAATGATCTCGTCAAATACGCAGAAAGTTGCATGTACAGCCCAGGCTATCGAAGCTACCTTTGA 1740 0.4276 MATGGDFLNGVGGGVKDHYGEDSATEDQLITPWNFSVASGHTLLRDPRYNKGLAFTEKERDSHYVRGLLPPAIFTQELQEKRLMHNLRQYDVPLHKYIALMDLQERNERLFYKILIENVEELLPVVYTPTVGEACQKYGSIYRRPQGLYISLKEKGKILEVLKNWPEKTIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSSCLPITIDVGTNNEKLLNDEFYIGLRQKRATGKEYAELLEEFMHAVKQNYGEKVLVQFEDFANHNAFELLDKYSSSHLVFNDDIQGTASVVLAGLLASLKLIGGTLADHTFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIWLVDSKGLIVSSRQQSLQHFKKPWAHEHEPVKDLLNAVKAIKPTVLIGTSGVGKTFTKEVVEAMASLNKKPLIFALSNPTSQSECTAEEAYTWSKGKAIFASGSPFDPVEYEGKVFVPGQGNNAYIFPGFGLGLIMSGAIRVRDEMLLAASEALASQVSQENYDKGLIYPPFTNIRKISANIAASVAAKTYELGLASHLPRPNDLVKYAESCMYSPGYRSYL 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05471 579 PIRSF ME 15 579 IPR001891 GO:0004470|GO:0004471
Trre5g05471 579 PANTHER MALIC ENZYME-RELATED 13 578 - -
Trre5g05471 579 ProSitePatterns Malic enzymes signature. 291 307 IPR015884 GO:0004471
Trre5g05471 579 PRINTS Malic enzyme signature 266 284 IPR001891 GO:0004470|GO:0004471
Trre5g05471 579 PRINTS Malic enzyme signature 291 307 IPR001891 GO:0004470|GO:0004471
Trre5g05471 579 PRINTS Malic enzyme signature 206 228 IPR001891 GO:0004470|GO:0004471
Trre5g05471 579 PRINTS Malic enzyme signature 110 134 IPR001891 GO:0004470|GO:0004471
Trre5g05471 579 PRINTS Malic enzyme signature 170 199 IPR001891 GO:0004470|GO:0004471
Trre5g05471 579 PRINTS Malic enzyme signature 425 441 IPR001891 GO:0004470|GO:0004471
Trre5g05471 579 PRINTS Malic enzyme signature 322 338 IPR001891 GO:0004470|GO:0004471
Trre5g05471 579 FunFam Malic enzyme 38 292 - -
Trre5g05471 579 SMART Malic_M_2 295 548 IPR012302 GO:0051287
Trre5g05471 579 Pfam Malic enzyme, NAD binding domain 295 546 IPR012302 GO:0051287
Trre5g05471 579 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 295 578 IPR036291 -
Trre5g05471 579 Gene3D - 293 579 - -
Trre5g05471 579 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 23 294 IPR046346 -
Trre5g05471 579 SMART malic_2 104 285 IPR012301 GO:0004471
Trre5g05471 579 FunFam Malic enzyme 293 579 - -
Trre5g05471 579 CDD NAD_bind_1_malic_enz 295 573 - -
Trre5g05471 579 Gene3D - 38 292 IPR037062 GO:0004471
Trre5g05471 579 Pfam Malic enzyme, N-terminal domain 104 284 IPR012301 GO:0004471
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05471 Trre-Chr5 55333036 55337188 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05471 K00029 - gmx:100818219 1048.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05471 5 55333036 55337188 Trre5g05471 5 55333036 55337188 ECH
Trre5g05471 5 55333036 55337188 Trre15g00448 15 3218666 3223109 ECH
Trre5g05471 5 55333036 55337188 Trre11g04701 11 58488741 58493142 ECH
Trre7g05710 7 62287935 62292562 Trre5g05471 5 55333036 55337188 ECH
Trre15g00448 15 3218666 3223109 Trre5g05471 5 55333036 55337188 ECH
Trre11g04701 11 58488741 58493142 Trre5g05471 5 55333036 55337188 ECH