Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05463 ATGACTAGGAGGAAAGTCAAGCTTGCCTTCATAACCAATGAATCAAAGAGGAGGACAACATTCAACAAAAGAAAAAAGGGTTTAATCAAAAAGGTCGATGAAATAAGCACACTCTGCGGAATCGAGGCATGTGCAATAATCTACGGTCAAAATGATGCTCAACCAGAGATTTGGCCATCACCTGTGGGAGTCCATACCGTGCTGTCAAGGTTTAGGGGATTGCCCGAAATGGAACAAACCAAAAAGATGCTGAATCAAGAGAGTTTCTTGAGAGAAAAGATACAGAAGGGACAAGAACAATTGAACAAACTAAGGAATGAAAACAGAAAAAACGAACTGACCCAACTCATGTTTCAATGCATTCATGCTGGCCAGATTGTTGACAATGTTGGCATGAATGATCTCAATGGTCTCTCTTGGTTGATTGATCAAAATATGAAACAAATCGAAAGGCGTATGGAAGAGGTACGAGCTGCACCGGTGGTCGAAAGGCGTATGGAAGAGACGCGAGCTGCAGCGGTGGTCGAAAATCATGCTGAAAATGTGACTGGAGATGCCCCGAAGTTTTAG 570 0.4281 MTRRKVKLAFITNESKRRTTFNKRKKGLIKKVDEISTLCGIEACAIIYGQNDAQPEIWPSPVGVHTVLSRFRGLPEMEQTKKMLNQESFLREKIQKGQEQLNKLRNENRKNELTQLMFQCIHAGQIVDNVGMNDLNGLSWLIDQNMKQIERRMEEVRAAPVVERRMEETRAAAVVENHAENVTGDAPKF 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05463 189 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Trre5g05463 189 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Trre5g05463 189 PANTHER MADS BOX PROTEIN 3 156 - -
Trre5g05463 189 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre5g05463 189 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre5g05463 189 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre5g05463 189 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Trre5g05463 189 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Trre5g05463 189 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Trre5g05463 189 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Trre5g05463 189 Coils Coil 87 114 - -
Trre5g05463 189 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05463 Trre-Chr5 55283619 55284376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05463 1 157 Type I MADS-box Gene Family AT5G48670 52.866 7.65e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre5g05463 SRF-TF 1.7e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05463 - - tpra:123915093 253.447