Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05457 ATGGCCAAAGAAACTTCAAAATCCCTCACGCTTATGTCCTTTTTTATGTTCATGTTCATGCTCAACTTCTACTCATCCCATGGAGAACAAGAGTTCGAGCTTCTCTTATCCTTCAAAGCATCCATCAAATTTGATCCTCTAAACTTTCTCTCCAACTGGGTCAACACTTCCTCTATTACTATCTGCAAGTGGCATGGCATAACCTGCGACAATTGGTCGCACGTTAACACCGTGTCACTCTCAGGAAAAAACATCTCCGGCGAGGTTTCCTCGTCAATTTTCCAACTTCCACATGTTACACACCTCGACCTCTCCAACAACCAGCTTGTTGGAGAAGTTGTTTTCAACTCTCCGTTCCTCTCTTCACTTCTTTACCTTAATCTCAGCAACAACAACCTCACCGGTTCCTTACCACAATCCTTATTTTCATCATCGTTTATCAACCTCGAAACTCTTGATCTCTCAAACAACATGTTTTCAGGCAAAATACCAGACCAAATTGGATTCCTTTCAAGCTTAACATATATTGATCTAGGTGGCAATGTTTTAGTAGGAAAAATTCCAAATTCCATCACCAACATGACAAGTTTAGAGTACTTAACTTTGGCTTCAAACCAATTAGTGGGTGAGATTCCAACAGAGATAAGTCTAATGAAGAGACTGAAATGGATCTACTTAGGATACAACAATCTTTCAGGTGAGATTCCAAAGAGCATTGGAAACTTACTTTCATTGAAGCACCTTAATCTTGTTTACAACAATCTCACAGGACAAATTCCTGAATCACTTGGAAACCTCACCAATCTTCAATATCTCTTTCTCTACCTAAACAAACTCACTGGCCCAATTCCCAAATCTATATTCCAATTGAAGAATCTTATTTCACTTGATCTCAGTGATAATTCTCTTTCAGGAGAGATTCCAAACCTTGTTGTTAACCTTCAAAAACTAGAGATTCTTCATCTTTTCTCAAACAACTTCACAGGTAAAATTCCAAACACTATAACATCTTTACCTCACCTTCAAATTCTTCAACTCTGGTCAAACAAATTAACAGGTGAAATCCCACAAACACTTGGTATGCACAATAACCTCACAATTCTTGACCTCTCTTCAAACAAACTCACAGGCAAAATCCCAAACAGCTTATGTGCATCCAAAAATCTTCAAAAACTTATCCTCTTTTCAAACTCTTTCAAAGGTGAAATCCCAAAAGGATTAACCTCTTGTAAAACTCTACAAAGAGTGAGACTCCAAAACAACAAATTATCTGGAAAATTGCCATTGGAAATCACCCAATTGCCCCAAATATACTTGTTGGATATCTCTGGAAACAAACTTTCTGGAAGAATCAATGATAGAAAATGGAACATGCCATCCCTTCAAATGCTTAATTTGGCTAACAACAATTTCTATGGAGAATTACCAAACTCTTTTGGTAGTAACAAACTTGAAGGATTGGACTTATCACAAAATCAATTTTCTGGTTACATTCAAATTGGTTTCAAAAATTTACCAGAACTTGTTCAATTGAAACTCAACAATAACAAACTCTTTGGAAAATTTCCAGAAGAAATTTTTCAATGCAACAAACTTGTTTCATTAGAATTAAGCCATAATCAGTTAAGCGGCGAGATTCCGATGAAACTCGCCGAGATGCCGGTTCTCGGTTTACTTGACTTATCAGAGAATCAATTTTCCGGTGAAATTCCAAAGAATTTAGGAAATGTTGAATCGCTTGTTGAAGTTAATCTATCGTATAATCATTTCCATGGAAGATTACCTTCCACCGAAGCTTTCTTTGCCATCAATGCAAGTTCAGTCGCCGGAAATAATCTCTGTGACGGTGACGGTGATGGTTCTAACGGTTTGCCACCGTGCAAAAGAAACAATCAGATGAATTCAACTACGTTGTTTTTTTCAGTTTGTGTTGTGTTAATGGGTTTGGTTGTTTTCGTTGGTGCTGGTTTTCTCGTTGTTTTCGTGCAGAGAAGGAAGAAGAATTTTGAGGTACGAAGAGTGGTTGAAAATGAAGATGGTTCTTGGGAAGTAATTTTCTTCGATTTTACAGCGTCGAAATTTGTTACCGTTGAGGATGTTTTATCATCGGTTAAAGAAGGAAAAGCGATTTCAAAAGGAAGAAACTGGGTTTCGTACGAAGGGAAGTGTGTGGCCAATGAAATGCGATTCGTAGTGAAAGAAATAATCGACACGAATTCTGTTTCGGTGAGTTTTTGGGATGATACAGTGACGTTTGGTAAAAAAGTGAGACATGAGAATATTGTTAAGCTTATTGGAATGTTGAGGTGTGGTAAAAGAGGGTATTTGGTTTATGAGTTTGAAGAGGGAAAAAATTTGAGGGAAATTTTGCATAATTTGAGTTGGCAAAAGAGGTGGAAAATTGCGGTGGAAATTGCAAAAGCGATTAAGTTCTTGCATTGTGAATGTTTTTGGATTGGTTTGGTTGGTGAGGTGTCGCCGGAGATGGTTTTGGTGGACGGAAAGGGTGTTCCTCGCCTTGAACTCAACCCTCCCGGTATAGGAACACCGATTATGGATATGAAATGTTTTGTCTCTTCTTCCTACATTGCTCCAGAGAAACGAAATGGGAAAGATGTGACAGAAAAGAGTGAGATATATGGTTTTGGTGTTATGCTTATTGAGTTATTAACGGGAAGAAGCACCATAGACATAGAAGCAGGAAATGGTATTCATCACAAGAATAATATTGTTGAATGGGCCCGTTATTGTTACTCTGATTGTCATCTTGACACGTGGATAGATCCTGTTATGATCAAGGGTGGAGATGTATCATCCTATCAAAACGACATTGTTGAGACCATGAATCTCGCATTACACTGTACCGCAGCTGATCCCACCACTAGGCCATGCGCAAGAGATGTACTCAAAGCCCTAGCGACTGTTCATTGCAGCACAAACACTTTTTGCTGA 2952 0.3838 MAKETSKSLTLMSFFMFMFMLNFYSSHGEQEFELLLSFKASIKFDPLNFLSNWVNTSSITICKWHGITCDNWSHVNTVSLSGKNISGEVSSSIFQLPHVTHLDLSNNQLVGEVVFNSPFLSSLLYLNLSNNNLTGSLPQSLFSSSFINLETLDLSNNMFSGKIPDQIGFLSSLTYIDLGGNVLVGKIPNSITNMTSLEYLTLASNQLVGEIPTEISLMKRLKWIYLGYNNLSGEIPKSIGNLLSLKHLNLVYNNLTGQIPESLGNLTNLQYLFLYLNKLTGPIPKSIFQLKNLISLDLSDNSLSGEIPNLVVNLQKLEILHLFSNNFTGKIPNTITSLPHLQILQLWSNKLTGEIPQTLGMHNNLTILDLSSNKLTGKIPNSLCASKNLQKLILFSNSFKGEIPKGLTSCKTLQRVRLQNNKLSGKLPLEITQLPQIYLLDISGNKLSGRINDRKWNMPSLQMLNLANNNFYGELPNSFGSNKLEGLDLSQNQFSGYIQIGFKNLPELVQLKLNNNKLFGKFPEEIFQCNKLVSLELSHNQLSGEIPMKLAEMPVLGLLDLSENQFSGEIPKNLGNVESLVEVNLSYNHFHGRLPSTEAFFAINASSVAGNNLCDGDGDGSNGLPPCKRNNQMNSTTLFFSVCVVLMGLVVFVGAGFLVVFVQRRKKNFEVRRVVENEDGSWEVIFFDFTASKFVTVEDVLSSVKEGKAISKGRNWVSYEGKCVANEMRFVVKEIIDTNSVSVSFWDDTVTFGKKVRHENIVKLIGMLRCGKRGYLVYEFEEGKNLREILHNLSWQKRWKIAVEIAKAIKFLHCECFWIGLVGEVSPEMVLVDGKGVPRLELNPPGIGTPIMDMKCFVSSSYIAPEKRNGKDVTEKSEIYGFGVMLIELLTGRSTIDIEAGNGIHHKNNIVEWARYCYSDCHLDTWIDPVMIKGGDVSSYQNDIVETMNLALHCTAADPTTRPCARDVLKALATVHCSTNTFC 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05457 983 FunFam Leucine-rich repeat receptor protein kinase EMS1 237 321 - -
Trre5g05457 983 Pfam Leucine Rich repeat 96 109 IPR001611 GO:0005515
Trre5g05457 983 Pfam Leucine Rich Repeat 292 313 IPR001611 GO:0005515
Trre5g05457 983 Gene3D Ribonuclease Inhibitor 145 239 IPR032675 -
Trre5g05457 983 Pfam Leucine rich repeat 220 279 IPR001611 GO:0005515
Trre5g05457 983 Pfam Leucine rich repeat 339 398 IPR001611 GO:0005515
Trre5g05457 983 Pfam Leucine rich repeat 148 207 IPR001611 GO:0005515
Trre5g05457 983 Pfam Leucine rich repeat 483 542 IPR001611 GO:0005515
Trre5g05457 983 ProSiteProfiles Leucine-rich repeat profile. 122 144 IPR001611 GO:0005515
Trre5g05457 983 Gene3D Phosphorylase Kinase; domain 1 688 780 - -
Trre5g05457 983 ProSiteProfiles Protein kinase domain profile. 704 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g05457 983 ProSiteProfiles Leucine-rich repeat profile. 364 386 IPR001611 GO:0005515
Trre5g05457 983 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 322 623 - -
Trre5g05457 983 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Trre5g05457 983 Pfam Protein kinase domain 709 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g05457 983 SUPERFAMILY RNI-like 277 596 - -
Trre5g05457 983 ProSiteProfiles Leucine-rich repeat profile. 292 314 IPR001611 GO:0005515
Trre5g05457 983 Gene3D Transferase(Phosphotransferase) domain 1 782 981 - -
Trre5g05457 983 SUPERFAMILY Protein kinase-like (PK-like) 680 975 IPR011009 -
Trre5g05457 983 Gene3D Ribonuclease Inhibitor 30 144 IPR032675 -
Trre5g05457 983 Gene3D Ribonuclease Inhibitor 244 312 IPR032675 -
Trre5g05457 983 Gene3D Ribonuclease Inhibitor 313 619 IPR032675 -
Trre5g05457 983 PANTHER RECEPTOR-LIKE PROTEIN 55 437 973 - -
Trre5g05457 983 SUPERFAMILY L domain-like 47 377 - -
Trre5g05457 983 SMART LRR_typ_2 338 362 IPR003591 -
Trre5g05457 983 SMART LRR_typ_2 290 314 IPR003591 -
Trre5g05457 983 SMART LRR_typ_2 458 482 IPR003591 -
Trre5g05457 983 SMART LRR_typ_2 505 529 IPR003591 -
Trre5g05457 983 SMART LRR_typ_2 146 170 IPR003591 -
Trre5g05457 983 SMART LRR_typ_2 364 386 IPR003591 -
Trre5g05457 983 SMART LRR_typ_2 96 117 IPR003591 -
Trre5g05457 983 SMART LRR_typ_2 553 577 IPR003591 -
Trre5g05457 983 SMART LRR_typ_2 242 266 IPR003591 -
Trre5g05457 983 SMART LRR_typ_2 194 218 IPR003591 -
Trre5g05457 983 SMART LRR_typ_2 120 144 IPR003591 -
Trre5g05457 983 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 668 780 - -
Trre5g05457 983 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 145 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05457 Trre-Chr5 55235720 55239175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05457 16 972 Receptor kinase-like Gene Family AT2G25790 49.432 0.0 864
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Singleton Trre5g05457 Pkinase 7.9e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05457 - - gmx:100777118 1347.41