Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05456 ATGGCAGTGAGTTCAGGATGCAAAGATGGTGGTAGAAATATATCAATGGACAACGGCAAGTACGTTCGCTACACACCGGAACAAGTCGAAGCACTTGAAAGACTCTACCATGAATGTCCTAAACCTACTTCTCTCCGTCGTCAACAGCTTATTAGAGACTGTCCTATTCTCTCTCATATTGAACCTAAACAGATCAAAGTTTGGTTCCAGAATCGTAGGTGTAGAGAGAAGCAGAGGAAAGAAGCTGGAAGGTTGCAAGCTGTGAACAGGAAGTTAACAGCAATGAATAAACTGCTTATGGAGGAAAATGACAGATTGCAGAAACAAGTGTCACAACTTGTGTATGAGAACACGTTTTTCCGCCAACATACACAAAATACGACCCTAGACACGACGGACACTAGTTGTGAGTCTGTGGTAACGAGTGGTCAGCAGCATCCACCAAGGGATGCTAGCCCTGCTGGACTTTTGTCCATTGCAGAGGAGACTTTAGCAGAGTTTCTATCAAAGGCTACTGGAACCGCTGTTGAGTGGGTCCAAATGCCCGGTATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCAATTTCTCATGGTTCCCCTGGAGTGGCTGCACGTGCCTGCGGCCTTGTGGGTTTAGAACCTGCCAGGGTTGCCGAAATCCTCAAAGATAGACTTTCATGGCATCGTGATTGCCGAACTGTGGATGTTCTAAATGTTATGTCCACAGCAAATGGAGGAACCATTGAATTGCTTTACATGCAGTTGTATGCACCAACAACTTTGGCACCAGGCCGTGACTTCTGGTTGCTGCGTTTCACATCAATTTTGGAGGATGGTAGTCTTGTGGTGTGTGAAAGATCACTTAACAACACTCAGAATGGTCCTAGTATGCCTCCAGTGCCGCATTTTGTTAGAGCTGACGTGTTGCCAAGCGGGTATCTGATTAGGCCTTGTGAAGGAGGGGGATCTATTATTCATATTGTTGATCATATGCTTTTAGAGCCTTGGAGTGTACCTGAAGTTTTGCGCCCACTTTATGAATCATCCATGCTACTTGCTCAGAGAACAACTATGGCAGCTTTACGTCATTTGAGGCAGATTTCTCAAGAAGTTTCTCAGCCAAGTGTGACAGGATGGGGAAGAAGGCCAGCAGCACTACGCGCACTTAGTCAGAGAATGAGCAAGGGATTCAATGAAGCTGTCAATGGCTTTACAGATGATGGATGGTCTATGTTAGAGAGTGATGGCATTGATGATGTTACCCTTCTCGTGAATTCATCGCCTAACAAGATGATGGGACTAAATCTTGGTTATAACAATGGATTTCCATCTGTCACCAGTTCTGTGCTATGTGCCAAAGCTTCCATGTTGTTACAGAATGTCCCACCGGCTATTCTTCTTAGATTCTTGCGGGAACACAGATCAGAATGGGCAGATACAAGTATTGATGCTTATTCTGCTGCTGCCATTAAAGCCGGTCCATGTAGCTTACCAGGGGCCAGAGCAGGTAGTTATGGTGGTCAGGTTATTCTTCCATTAGCTCACACAATTGAGCATGAAGAGTTCATGGAGGTTATTAAGCTTGAAAACATGGGCTACTATAGGGATGATATGACAATGCCTGGTGATATTTTCCTCTTACAACTATGTAGTGGAGTGGACGAGCATGCAGTTGGCACAAGTGCAGAACTTATTTTTGCTCCAATAGATGCATCTTTCTCTGATGATGCACCCATTTTGCCTTCTGGCTTTCGCATCATACCTCTTGATTCTGCCACGGATGCTGCTAGTCCAAACCGTACACTTGATCTTGCTTCTGCACTTGAAGTTGGAACCACAGGACACAAAGCAGGCGGTGAGAATTCAGGTCATTCTGGGAACACAAAATCTGTGATGACAATAGCATTCCAGTTTGCATTTGAAGTCCATCTTCAAGATAATATAGCAGCTATGGCACGACAATATGTGCGTAGCATTGTCGCATCTGTTCAGAGGGTTTCATTAGCACTTTCTCCTTCGCGCTTTGGTTCGCAGAGTCCTTTTCCGTCAGCACCTGGCACTCCTGAGGCACAAACACTTACTCGGTGGATCTGCAACAGCTATAGATTCTATCTAGGCGTAGAATTACTAAAGTGTGAAGGCAGTGAATCCATACTGAAATCCCTTTGGCATCACTCAGATGCAGTTTTGTGCTGCTCTTTGAAGGCAACACCAGTTTTTACGTTTGCGAATCAAGCTGGACTTGACATGCTTGAAACCACCTTGGTCGCACTTCAAGACATCACTTTGGAAAAGATCTTTGATGACAATGGAAAGAAAACTCTGTGGTCTGAATTTCCACAGATAATGCAGCAGGGCTTCACATGTATTCAAGGCGGTATTTGTTTATCCAGCATGGGGAGGCCAATAACTTATGAGAGAGCAGTAGCATGGAAAGTATTAAACGAAGAAGAATCGGCTCATTGTGTTTGTTTTATGTTCATCAATTGGTCTTTTGTCTAA 2505 0.4463 MAVSSGCKDGGRNISMDNGKYVRYTPEQVEALERLYHECPKPTSLRRQQLIRDCPILSHIEPKQIKVWFQNRRCREKQRKEAGRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQHTQNTTLDTTDTSCESVVTSGQQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGSPGVAARACGLVGLEPARVAEILKDRLSWHRDCRTVDVLNVMSTANGGTIELLYMQLYAPTTLAPGRDFWLLRFTSILEDGSLVVCERSLNNTQNGPSMPPVPHFVRADVLPSGYLIRPCEGGGSIIHIVDHMLLEPWSVPEVLRPLYESSMLLAQRTTMAALRHLRQISQEVSQPSVTGWGRRPAALRALSQRMSKGFNEAVNGFTDDGWSMLESDGIDDVTLLVNSSPNKMMGLNLGYNNGFPSVTSSVLCAKASMLLQNVPPAILLRFLREHRSEWADTSIDAYSAAAIKAGPCSLPGARAGSYGGQVILPLAHTIEHEEFMEVIKLENMGYYRDDMTMPGDIFLLQLCSGVDEHAVGTSAELIFAPIDASFSDDAPILPSGFRIIPLDSATDAASPNRTLDLASALEVGTTGHKAGGENSGHSGNTKSVMTIAFQFAFEVHLQDNIAAMARQYVRSIVASVQRVSLALSPSRFGSQSPFPSAPGTPEAQTLTRWICNSYRFYLGVELLKCEGSESILKSLWHHSDAVLCCSLKATPVFTFANQAGLDMLETTLVALQDITLEKIFDDNGKKTLWSEFPQIMQQGFTCIQGGICLSSMGRPITYERAVAWKVLNEEESAHCVCFMFINWSFV 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05456 834 CDD bZIP 72 111 - -
Trre5g05456 834 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 16 834 IPR044830 GO:0003700
Trre5g05456 834 SUPERFAMILY Bet v1-like 158 369 - -
Trre5g05456 834 FunFam Homeobox-leucine zipper protein REVOLUTA 20 75 - -
Trre5g05456 834 Pfam START domain 159 367 IPR002913 GO:0008289
Trre5g05456 834 CDD START_ArGLABRA2_like 153 368 - -
Trre5g05456 834 SMART START_1 158 368 IPR002913 GO:0008289
Trre5g05456 834 Coils Coil 85 116 - -
Trre5g05456 834 Pfam MEKHLA domain 693 833 IPR013978 -
Trre5g05456 834 ProSiteProfiles START domain profile. 149 377 IPR002913 GO:0008289
Trre5g05456 834 Gene3D - 192 374 IPR023393 -
Trre5g05456 834 SMART HOX_1 17 83 IPR001356 GO:0003677
Trre5g05456 834 SUPERFAMILY Homeodomain-like 19 82 IPR009057 -
Trre5g05456 834 Gene3D - 12 85 - -
Trre5g05456 834 Pfam Homeodomain 20 78 IPR001356 GO:0003677
Trre5g05456 834 CDD homeodomain 20 80 IPR001356 GO:0003677
Trre5g05456 834 ProSiteProfiles 'Homeobox' domain profile. 15 79 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05456 Trre-Chr5 55219710 55224393 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05456 10 834 Homeobox Transcription Factor Family AT4G32880 79.187 0.0 1370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre5g05456 START 9e-51 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05456 K09338 - gmx:100815727 1531.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05456 5 55219710 55224393 Trre5g05456 5 55219710 55224393 ECH