Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05455 ATGATGGCAGTGAGTTCAGGATGCAAAGATGGTGGTAGAAATATATCAATGGACAACGGCAAGTACGTTCGCTACACACCGGAACAAGTCGAAGCACTTGAAAGACTCTACCATGAATGTCCTAAACCTACTTCTCTCCGTCGTCAACAGCTTATTAGAGACTGTCCTATTCTCTCTCATATTGAACCTAAACAGATCAAAGTTTGGTTCCAGAATCGTAGGTGTAGAGAGAAGCAGAGGAAAGAAGCTGGAAGGTTGCAAGCTGTGAACAGGAAGTTAACAGCAATGAATAAACTGCTTATGGAGGAAAATGACAGATTGCAGAAACAAGTGTCACAACTTGTGTATGAGAACACGTTTTTCCGCCAACATACACAAAATACGACCCTAGACACGACGGACACTAGTTGTGAGTCTGTGGTAACGAGTGGTCAGCAGCATCCACCAAGGGATGCTAGCCCTGCTGGACTTTTGTCCATTGCAGAGGAGACTTTAGCAGAGTTTCTATCAAAGGCTACTGGAACCGCTGTTGAGTGGGTCCAAATGCCCGGTATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCAATTTCTCATGGTTCCCCTGGAGTGGCTGCACGTGCCTGCGGCCTTGTGGGTTTAGAACCTGCCAGGGTTGCCGAAATCCTCAAAGATAGACTTTCATGGCATCGTGATTGCCGAACTGTGGATGTTCTAAATGTTATGTCCACAGCAAATGGAGGAACCATTGAATTGCTTTACATGCAGTTGTATGCACCAACAACTTTGGCACCAGGCCGTGACTTCTGGTTGCTGCGTTTCACATCAATTTTGGAGGATGGTAGTCTTGTGGTGTGTGAAAGATCACTTAACAACACTCAGAATGGTCCTAGTATGCCTCCAGTGCCGCATTTTGTTAGAGCTGACGTGTTGCCAAGCGGGTATCTGATTAGGCCTTGTGAAGGAGGGGGATCTATTATTCATATTGTTGATCATATGCTTTTAGAGCCTTGGAGTGTACCTGAAGTTTTGCGCCCACTTTATGAATCATCCATGCTACTTGCTCAGAGAACAACTATGGCAGCTTTACGTCATTTGAGGCAGATTTCTCAAGAAGTTTCTCAGCCAAGTGTGACAGGATGGGGAAGAAGGCCAGCAGCACTACGCGCACTTAGTCAGAGAATGAGCAAGGGATTCAATGAAGCTGTCAATGGCTTTACAGATGATGGATGGTCTATGTTAGAGAGTGATGGCATTGATGATGTTACCCTTCTCGTGAATTCATCGCCTAACAAGATGATGGGACTAAATCTTGGTTATAACAATGGATTTCCATCTGTCACCAGTTCTGTGCTATGTGCCAAAGCTTCCATGTTGTTACAGAATGTCCCACCGGCTATTCTTCTTAGATTCTTGCGGGAACACAGATCAGAATGGGCAGATACAAGTATTGATGCTTATTCTGCTGCTGCCATTAAAGCCGGTCCATGTAGCTTACCAGGGGCCAGAGCAGGTAGTTATGGTGGTCAGGTTATTCTTCCATTAGCTCACACAATTGAGCATGAAGAGTTCATGGAGGTTATTAAGCTTGAAAACATGGGCTACTATAGGGATGATATGACAATGCCTGGTGATATTTTCCTCTTACAACTATGTAGTGGAGTGGACGAGCATGCAGTTGGCACAAGTGCAGAACTTATTTTTGCTCCAATAGATGCATCTTTCTCTGATGATGCACCCATTTTGCCTTCTGGCTTTCGCATCATACCTCTTGATTCTGCCACGGATGCTGCTAGTCCAAACCGTACACTTGATCTTGCTTCTGCACTTGAAGTTGGAACCACAGGACACAAAGCAGGCGGTGAGAATTCAGGTCATTCTGGGAACACAAAATCTGTGATGACAATAGCATTCCAGTTTGCATTTGAAGTCCATCTTCAAGATAATATAGCAGCTATGGCACGACAATATGTGCGTAGCATTGTCGCATCTGTTCAGAGGGTTTCATTAGCACTTTCTCCTTCGCGCTTTGGTTCGCAGAGTCCTTTTCCGTCAGCACCTGGCACTCCTGAGGCACAAACACTTACTCGGTGGATCTGCAACAGCTATAGATTCTATCTAGGCGTAGAATTACTAAAGTGTGAAGGCAGTGAATCCATACTGAAATCCCTTTGGCATCACTCAGATGCAGTTTTGTGCTGCTCTTTGAAGGCAACACCAGTTTTTACGTTTGCGAATCAAGCTGGACTTGACATGCTTGAAACCACCTTGGTCGCACTTCAAGACATCACTTTGGAAAAGATCTTTGATGACAATGGAAAGAAAACTCTGTGGTCTGAATTTCCACAGATAATGCAGCAGGGCTTCACATGTATTCAAGGCGGTATTTGTTTATCCAGCATGGGGAGGCCAATAACTTATGAGAGAGCAGTAGCATGGAAAGTATTAAACGAAGAAGAATCGGCTCATTGTGTTTGTTTTATGTTCATCAATTGGTCTTTTGTCTAA 2508 0.4462 MMAVSSGCKDGGRNISMDNGKYVRYTPEQVEALERLYHECPKPTSLRRQQLIRDCPILSHIEPKQIKVWFQNRRCREKQRKEAGRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQHTQNTTLDTTDTSCESVVTSGQQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGSPGVAARACGLVGLEPARVAEILKDRLSWHRDCRTVDVLNVMSTANGGTIELLYMQLYAPTTLAPGRDFWLLRFTSILEDGSLVVCERSLNNTQNGPSMPPVPHFVRADVLPSGYLIRPCEGGGSIIHIVDHMLLEPWSVPEVLRPLYESSMLLAQRTTMAALRHLRQISQEVSQPSVTGWGRRPAALRALSQRMSKGFNEAVNGFTDDGWSMLESDGIDDVTLLVNSSPNKMMGLNLGYNNGFPSVTSSVLCAKASMLLQNVPPAILLRFLREHRSEWADTSIDAYSAAAIKAGPCSLPGARAGSYGGQVILPLAHTIEHEEFMEVIKLENMGYYRDDMTMPGDIFLLQLCSGVDEHAVGTSAELIFAPIDASFSDDAPILPSGFRIIPLDSATDAASPNRTLDLASALEVGTTGHKAGGENSGHSGNTKSVMTIAFQFAFEVHLQDNIAAMARQYVRSIVASVQRVSLALSPSRFGSQSPFPSAPGTPEAQTLTRWICNSYRFYLGVELLKCEGSESILKSLWHHSDAVLCCSLKATPVFTFANQAGLDMLETTLVALQDITLEKIFDDNGKKTLWSEFPQIMQQGFTCIQGGICLSSMGRPITYERAVAWKVLNEEESAHCVCFMFINWSFV 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05455 835 Pfam START domain 160 368 IPR002913 GO:0008289
Trre5g05455 835 ProSiteProfiles START domain profile. 150 378 IPR002913 GO:0008289
Trre5g05455 835 Gene3D - 193 375 IPR023393 -
Trre5g05455 835 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 17 835 IPR044830 GO:0003700
Trre5g05455 835 FunFam Homeobox-leucine zipper protein REVOLUTA 21 76 - -
Trre5g05455 835 Coils Coil 86 117 - -
Trre5g05455 835 SMART HOX_1 18 84 IPR001356 GO:0003677
Trre5g05455 835 SUPERFAMILY Bet v1-like 159 370 - -
Trre5g05455 835 SMART START_1 159 369 IPR002913 GO:0008289
Trre5g05455 835 Gene3D - 13 86 - -
Trre5g05455 835 CDD homeodomain 21 81 IPR001356 GO:0003677
Trre5g05455 835 CDD START_ArGLABRA2_like 154 369 - -
Trre5g05455 835 Pfam Homeodomain 21 79 IPR001356 GO:0003677
Trre5g05455 835 ProSiteProfiles 'Homeobox' domain profile. 16 80 IPR001356 GO:0003677
Trre5g05455 835 CDD bZIP 73 112 - -
Trre5g05455 835 SUPERFAMILY Homeodomain-like 20 83 IPR009057 -
Trre5g05455 835 Pfam MEKHLA domain 694 834 IPR013978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05455 Trre-Chr5 55219707 55224393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05455 11 835 Homeobox Transcription Factor Family AT4G32880 79.187 0.0 1371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre5g05455 START 9e-51 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05455 K09338 - gmx:100815727 1533.47