Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05454 ATGGAAGCTCAAGAGTTTTTCCATACCAACTTTTGCCAAGAATTAGACAACAATTCCACAACCAACAACATTAATGTAAACACTGCTGCTTCCGACCACTTTGTAGTTGAAGATCTCTTTGATTTCTCTAATGATGATGCTGCCATTACCGACCCCGCTTTCGACGATTCTCCTCCTACCAACTCTAATGATTCTCCTCCTCCTGAAACCAACACCAATTCCAATTTTTTCCTCGATAACTCGTGCCAGAATTCTGCGGACGGCCCTTTCTCCGGCGAACTTTCCGTCCCGTATGATGATCTTGCGGAGCTTGAATGGCTATCCAAATTTGCCGAGGAATCATTTTCGAGTGAGGACCTACAAAAGCTAATTTTGATATCTGGTATGAAAGCGCCAAATGACACTACATCGAAAACCAAAGGCGAATCCAACCCAATATTACACCCTCAAGTTCCAGTCCCAGCCAAAGCCCGCAGCAAGCGGTCACGTGGACCTCCATGCAACTGGACTTCACGTCTTCTAGTTCTCTCTCCAACTACCACCACTACCACCACATCTTCTCATTCTGATACCATTGTTCCACCAAAAAAACCCTCTCCAAGAAAGAGAGACTCCACTGATGGAGGAGAGGGACGCAAGTGCCTTCATTGTGCCACTGATAAGACTCCTCAATGGCGGACTGGGCCATTGGGCCCAAAGACATTATGCAATGCATGTGGCGTTAGGTACAAGTCAGGTCGACTTGTACCTGAGTATAGGCCTGCAGCAAGCCCAACATTTGTGTTGACTAAACACTCCAACTCGCATCGAAAGGTGCAAGAGCTCCGGCGCCAAAAGGAGATGATGAGGGCCCAACAACACCAATTGTTGCAACTACAACATCATCACAACCTTATGTTTGATGGAGCATCCAACGGTGATGATTACTTGATCCATCAACATGTGGGCCCCGATTTCACACACCTAATGTAG 972 0.4671 MEAQEFFHTNFCQELDNNSTTNNINVNTAASDHFVVEDLFDFSNDDAAITDPAFDDSPPTNSNDSPPPETNTNSNFFLDNSCQNSADGPFSGELSVPYDDLAELEWLSKFAEESFSSEDLQKLILISGMKAPNDTTSKTKGESNPILHPQVPVPAKARSKRSRGPPCNWTSRLLVLSPTTTTTTTSSHSDTIVPPKKPSPRKRDSTDGGEGRKCLHCATDKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVQELRRQKEMMRAQQHQLLQLQHHHNLMFDGASNGDDYLIHQHVGPDFTHLM 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05454 323 PANTHER GATA TRANSCRIPTION FACTOR 20 286 - -
Trre5g05454 323 Gene3D - 209 289 IPR013088 GO:0006355|GO:0008270
Trre5g05454 323 MobiDBLite consensus disorder prediction 47 79 - -
Trre5g05454 323 ProSitePatterns GATA-type zinc finger domain. 214 239 IPR000679 GO:0006355|GO:0043565
Trre5g05454 323 ProSiteProfiles GATA-type zinc finger domain profile. 208 244 IPR000679 GO:0006355|GO:0043565
Trre5g05454 323 PIRSF Txn_fac_GATA_plant 5 304 IPR016679 GO:0003677|GO:0005634|GO:0045893
Trre5g05454 323 MobiDBLite consensus disorder prediction 55 79 - -
Trre5g05454 323 CDD ZnF_GATA 213 260 IPR000679 GO:0006355|GO:0043565
Trre5g05454 323 FunFam GATA transcription factor 204 289 - -
Trre5g05454 323 Coils Coil 272 292 - -
Trre5g05454 323 Pfam GATA zinc finger 214 247 IPR000679 GO:0006355|GO:0043565
Trre5g05454 323 MobiDBLite consensus disorder prediction 172 193 - -
Trre5g05454 323 MobiDBLite consensus disorder prediction 134 213 - -
Trre5g05454 323 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 209 271 - -
Trre5g05454 323 MobiDBLite consensus disorder prediction 195 213 - -
Trre5g05454 323 SMART GATA_3 208 258 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05454 Trre-Chr5 55197601 55200427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05454 32 323 C2C2-Gata Transcription Factor Family AT4G32890 49.686 4.56e-90 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre5g05454 GATA 1.6e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05454 - - mtr:11432019 509.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05454 5 55197601 55200427 Trre5g05454 5 55197601 55200427 ECH