Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05451 ATGGAGTCTGTTGCCTCCAATTCTAATTCAACATCATCAAATAACAATAACAATAATAACCGTCGCCGTCATTCTCGTTTCAAACATAGCCAACCGATTTCAGATAGAATAGTTAGAGCTCTAAAACACGGTCTCCGTCTCCTACACCGTTCCGGCTCAACTTTCTTCATATTCGGCGCAACAGGGAACGTCTACACGGTAACCTTATCGTCAACTCCCTCTTGCACGTGCCCTGACCGGACAACGCCGTGCAAACACATTCTCTTCGTTATGATTCGAGTATTAGGCGTTTCACAGAATGACGCATGTGTCCGTAGAAGAAACCTTCGACCATGTCAGCTTCAACGACTTCTTAACATGCCAACATTGTCCGAAGCGGTTGCAGGGTTTAAACTTCGACAAAGGTTTCACCAGTTGTTTTTCGAAGGAGGGACGTCGAAGAAGGAAAGTGATGTAGAGATGGAAGAGGGTTCTGCTTGTCCTGTTTGTCTTGAAGAGATGGAGAAAGAAGAGAGATTGGTGGCTTGTGGAACATGTAGGAATGTTATTCATGAAGAGTGTTTGGTTAGGTGGAAGAGAAGTAGGGGAAGAAGATCAGCTAGTTGTGTGATTTGTAGGGCAAGGTGGAGGGATAGAACAGAACAAGATAAGTATGTTAATTTATCTGCTTATGTTAGTGAGGATGATTTGATGGCACAATCATCTGGGGGTATTTGCACTGGCTAG 726 0.4408 MESVASNSNSTSSNNNNNNNRRRHSRFKHSQPISDRIVRALKHGLRLLHRSGSTFFIFGATGNVYTVTLSSTPSCTCPDRTTPCKHILFVMIRVLGVSQNDACVRRRNLRPCQLQRLLNMPTLSEAVAGFKLRQRFHQLFFEGGTSKKESDVEMEEGSACPVCLEEMEKEERLVACGTCRNVIHEECLVRWKRSRGRRSASCVICRARWRDRTEQDKYVNLSAYVSEDDLMAQSSGGICTG 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05451 241 SUPERFAMILY RING/U-box 150 214 - -
Trre5g05451 241 Pfam Ring finger domain 159 206 IPR001841 -
Trre5g05451 241 MobiDBLite consensus disorder prediction 1 31 - -
Trre5g05451 241 MobiDBLite consensus disorder prediction 1 20 - -
Trre5g05451 241 ProSiteProfiles Zinc finger SWIM-type profile. 65 95 IPR007527 GO:0008270
Trre5g05451 241 PANTHER RING FINGER AND SWIM DOMAIN-CONTAINING PROTEIN 2 10 220 IPR039903 GO:0061630
Trre5g05451 241 ProSiteProfiles Zinc finger RING-CH-type profile. 152 212 IPR011016 GO:0008270
Trre5g05451 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 224 IPR013083 -
Trre5g05451 241 ProSiteProfiles Zinc finger RING-type profile. 160 206 IPR001841 -
Trre5g05451 241 Pfam SWIM zinc finger 65 93 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05451 Trre-Chr5 55176511 55177236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05451 155 232 C3H Transcription Factor Family AT3G58720 32.530 1.33e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05451 - - var:108321788 359.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05451 5 55176511 55177236 Trre5g05451 5 55176511 55177236 ECH