Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05445 ATGAAATCATTAGTGCCGACTCTTTCTAGCTTCATGATTCTGGCGTTGCTCATCGTTCCTCAAGTTGCTGCTAAACAAATTGAAGAATATGCACATGGGATATTTTTTTTAGCCAAAGCTCATAAAATGGTTAAAGTAGATAGAGATGAATCATCTCCATATGTTGATATGCTTGCGGCACAAGATGTTGCTACAGGATGCAAGGAGCTGGGCATAACTGTTCTTCATATCAAGCTCCGTGCAATTGGAGGAAACAAGAACAAAACACCAGGTCCTGGTGCTCAGGCTGCTCGCACGTTCAGGAATGAAAATTGGTCGCATAGGTACGACAAGCTTATTGTTGAAATAGATGTTGAAGTTGTTCTCCACTGCCTCTATGGCAATTTGAAGTTAGCTGAACTTGATCTTGTAATGTTAGTGTTTGGATTTATGTTCGGCGAAACTTCTGTAATTTATGTTGGACGATGTAAGAATGTTGCACTTGTTTTAGTTGATGTAGCTAGGAATGTAGGTGCTACATGTTGGATTGGAAATGTTTCGTCTCGTTTCTCTCATTACTTGTAA 564 0.3972 MKSLVPTLSSFMILALLIVPQVAAKQIEEYAHGIFFLAKAHKMVKVDRDESSPYVDMLAAQDVATGCKELGITVLHIKLRAIGGNKNKTPGPGAQAARTFRNENWSHRYDKLIVEIDVEVVLHCLYGNLKLAELDLVMLVFGFMFGETSVIYVGRCKNVALVLVDVARNVGATCWIGNVSSRFSHYL 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05445 187 Pfam Ribosomal protein S11 40 97 IPR001971 GO:0003735|GO:0005840|GO:0006412
Trre5g05445 187 SUPERFAMILY Translational machinery components 43 97 - -
Trre5g05445 187 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 43 101 IPR001971 GO:0003735|GO:0005840|GO:0006412
Trre5g05445 187 Gene3D Ribosomal protein S11 33 116 IPR036967 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05445 Trre-Chr5 55085032 55088776 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05445 44 97 Cytoplasmic Ribosomal Protein Gene Family AT3G11510 79.630 3.17e-26 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05445 K02955 - cit:112495483 93.5893