Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05432 ATGGCAGAGTTACCACAAGGTGTGACTCCTAGTAAGGGTGTTGTAATAATTGTTCTTTCCATAATGTTTCTCATAACTTTTATCTTACTTGTTTATGTTAAATTCTGTCGTGTTACGCCTCTTCATCTTCTAAATCATCACCCTCTTCATCTTCAAAACAATCAAGCACAAACTCAATCAAGGTCTATAGTTTCTGGTGTTGAAAAAAAAGTAATTGAAACACTTCCTTTTTTCAAATTTTCTTCTTTAAAGGGATCCAAACAAGGACTAGAATGTACCGTTTGTTTGTCGAAATTCGAAGATGAAGAGATTCTTAGATTGTTGCCGAAATGCAAGCACGCGTTTCATATGAATTGTATTGATCAGTGGCTTGAAAGTCACTCTACTTGTCCTCTTTGTAGGTATATGGTTGAAGAAAATGACATAAAAAACTTCACTTTTTCATTCAGTTCAAGATTCTTAAGAGTCCCTTCAAATTTAGGTGAAGACCCAAATCTTGAAATCTTTATTCAACGCGAACCGTCACAAAGAAGAAGCAACAAAGAAGAACAAGAACTGGTTTTTCTTGATTATGAAGAAGGTGGTAGCAGTAATAATGTTACAAAGTGGAAACAAGAACAATCTTTGCATATGATTAATCATAAAATATTAATCTCTGATGCTGTTACAAGGAGTAGATGGAGTGATCTTAATTCTTCAGATTTGTTATCATTAAAAAGTGAGATGCTTCATGATGTATCAAGTGCGAGATTCGATCCTAATGACGAGGATGAAAATTCGTTTACAGCATTGAATCCTGGTGAGAAAAGGTCTATGTCTGAGATTGCAAATGTTCCAAGGTTTGTGGAAATCAATAGAAGGAATGGTAATGGAGAGAATGGAAGTGATGAGAGGTTGTGGAGGATTTGGTTGCCAATTGCAAGGAGAACAGTTCAATGGTTTGCAAGACAAGAAACGAATTCGGTTCAATCACAACATAAACATTTAGCTTCAATCGTCTGA 1002 0.3523 MAELPQGVTPSKGVVIIVLSIMFLITFILLVYVKFCRVTPLHLLNHHPLHLQNNQAQTQSRSIVSGVEKKVIETLPFFKFSSLKGSKQGLECTVCLSKFEDEEILRLLPKCKHAFHMNCIDQWLESHSTCPLCRYMVEENDIKNFTFSFSSRFLRVPSNLGEDPNLEIFIQREPSQRRSNKEEQELVFLDYEEGGSSNNVTKWKQEQSLHMINHKILISDAVTRSRWSDLNSSDLLSLKSEMLHDVSSARFDPNDEDENSFTALNPGEKRSMSEIANVPRFVEINRRNGNGENGSDERLWRIWLPIARRTVQWFARQETNSVQSQHKHLASIV 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05432 333 SMART ring_2 92 133 IPR001841 -
Trre5g05432 333 FunFam RING-H2 finger protein ATL43 67 141 - -
Trre5g05432 333 SUPERFAMILY RING/U-box 73 139 - -
Trre5g05432 333 ProSiteProfiles Zinc finger RING-type profile. 92 134 IPR001841 -
Trre5g05432 333 CDD RING-H2_EL5-like 91 134 - -
Trre5g05432 333 Pfam Ring finger domain 91 134 IPR001841 -
Trre5g05432 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 144 IPR013083 -
Trre5g05432 333 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 6 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05432 Trre-Chr5 54965375 54966376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05432 10 329 C3H Transcription Factor Family AT2G20030 40.782 7.19e-72 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05432 K10664 - gmx:100816668 372.859