Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05430 ATGATCTCATCCTTAATGTTACCATCTGCTGCTACAACATTAAGAAGACCATGTTGTAGTTGTAGCATCACTCCATCATCATCATCTTCACGAAGACTTGCTCTCTTTCATCTTCTCACTACCGGTGGTATTGCTTTACCACAACAATCACAATTATTTGGTGCAAAAGGATCGCAATTGTTCCGAATACCAGAAGCTAATGCTGCCGAAAAGCTTGACCAAAACTTGTTTGATTGGGTCCAAAATGACAACAGAAGATTTCTACATGTTGTTTACAGTGTTGGAGATTTGGACAAGACTATAAAATTCTACACTGAATGCCTTGGCATGAAGCTGTTGAGAAAACGCGATATACCAGAAGACAAATATTCAAATGCATTTCTTGGATATGGGCCTGAAGAGTCCTACTTTACAGTTGAACTTACTTATAATTATGGAGTGGATAAATATAACATTGGAACTGGTTTTGGTCATTTTGGTATTGTAGCCGAAGATGTTGCAAAGACAGTGGATATTGTAAAAGCAAAAGGGGGAAAGGTTACCAGGGAACCGAGTCTTGTCAAAGGTGGCTCTGTAGTAACTGCTTCCGTTGAAGATCCTAGTGGTTATAGGTTTGAGCTTTTAGAGAGAAAACCTACACGCGAACCCTTATCCCAAGTGAATCTTCAAGTAAGCGATCTTGATGGTGTCGTAGCCTTCTATCAGAAAGCTGCAGGCATGAAACTTCTCCGTAAGATAGACAACCCTGAGGAAAAGTACACAGTAGCCGTGTTGGGTTATGGTCCTGAAGCTAATGGTCCTGTTCTAGAACTGAGATACAACTACGGTGTCACTAATTATGATAAAGGAAATGGCTATACACAGATTGCAATAGGCACGAACGATGTCTATAAGACTGCAGAAGCAATCAAATTAAGTGGAGGGAAGATTATCCGTGAACCTGGACCCTTACCGGTTATCAACACCAAGATCGTTGTTTGTTTGGACCCCGATGGTTGGAAATTGGTATTTGTTGATAATGTTGATTTTCTCAAGGAATTAGAGTGA 1047 0.4031 MISSLMLPSAATTLRRPCCSCSITPSSSSSRRLALFHLLTTGGIALPQQSQLFGAKGSQLFRIPEANAAEKLDQNLFDWVQNDNRRFLHVVYSVGDLDKTIKFYTECLGMKLLRKRDIPEDKYSNAFLGYGPEESYFTVELTYNYGVDKYNIGTGFGHFGIVAEDVAKTVDIVKAKGGKVTREPSLVKGGSVVTASVEDPSGYRFELLERKPTREPLSQVNLQVSDLDGVVAFYQKAAGMKLLRKIDNPEEKYTVAVLGYGPEANGPVLELRYNYGVTNYDKGNGYTQIAIGTNDVYKTAEAIKLSGGKIIREPGPLPVINTKIVVCLDPDGWKLVFVDNVDFLKELE 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05430 348 ProSitePatterns Glyoxalase I signature 1. 89 110 IPR018146 GO:0004462|GO:0046872
Trre5g05430 348 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 216 340 IPR037523 -
Trre5g05430 348 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 86 210 IPR037523 -
Trre5g05430 348 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 217 340 IPR029068 -
Trre5g05430 348 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 219 336 IPR004360 -
Trre5g05430 348 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 87 207 IPR004360 -
Trre5g05430 348 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 85 212 IPR029068 -
Trre5g05430 348 Gene3D - 213 348 IPR029068 -
Trre5g05430 348 PANTHER LACTOYLGLUTATHIONE LYASE 70 348 - -
Trre5g05430 348 Gene3D - 58 212 IPR029068 -
Trre5g05430 348 NCBIfam lactoylglutathione lyase 87 212 IPR004361 GO:0004462|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05430 Trre-Chr5 54958688 54960800 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05430 217 339 Calmodulin-binding Proteins AT1G08110 24.324 7.35e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05430 K01759 - gmx:100810908 526.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05430 5 54958688 54960800 Trre5g05430 5 54958688 54960800 ECH