Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05426 ATGGAGTGGGTCGTCGGCGGCAAGTTTAAGATTGGTTGCAAAATCGGAAGCGGTTCATTTGGTGAAATTTATATCGCGTCAGATATGGATACCTCTGAGATCGTAGCCGTCAAAATGGAGAAGAAGAAAACAAGGCATCCACAACTATTGTATGAGGCTAAATTATATAGTATTCTTCAAGGAGAAAGTGGTGTTCCAAGTATGAAATGGTGTGGTACTGACGGAGACCATAATGTTCTGGTTATTGATCTTTTGGGACGTAGTCTGGAGGACCTTTTTGTCTTTTGCGGTAGCAAGTTTTCTTTAAAAACAGTTTTGATGTTGGCCGACCAGATGCTTTCGAGAATAGAATACATGCATTCCAAGGGATTTTTGCATAGAGATATAAAACCAGATAACTTTCTAATGGGTATTAGGAGAAAATCAAGCCAGGTTTATATTATTGATTTCGGACTAGGAAAAAGATATAAGGATCCCAAAACAAACAAGCATATTCCTTACAGAGAGAATAAAAATTTAACCGGGACAGCACGATATGCAAGTTGCAATACTCACTTAGGAATTGAACAAAGTCGTCGTGATGATTTGGAGTCTATTGGCTATGTTCTTATGTACTTCTTAAGAGGAAGCCTTCCTTGGCAGGGTCTGAAAGCTGTCACCAAAGAGGAAAAATATGATAAGATTCGTGAGAAGAAGTTATCAACTTCCATTGAGAAACTTTGCGAGTCATATCCCGTGGAGTTCACATCTTACTTTCATTATTGTCGCTCTTTGACATTTGATCAAGATCCAGATTACGGGTTATTAAAGCGTCTGTTTTGTGATTTGTTCACCCGTGAAGGATATGAGCATGACAATTTATTCGACTGGACCATCCTAAAACATCGGCAGACGCAACAGACAAGGAGACAAGTGCAGCCTTCAGATGCTGTGCCTAGTGCTGTGCCTACCAGTCTACAACCAATGATTGTGGAAAACCATACAGGAAGCAATAATTCACCTCAAATTACTGTAACAAAATTGGTAAGCAATCTTGATCGTCTAAATGTGCGTGGGCAGCCTAAGCCATCCAATGTTAAGAATCTAAATGCCAAGAATCATACCGGAAAACATAATGTAAACAATGGTCCATCCACTTCATCTGCTTTGCCCAAATTGACTACAGAAAATGTTTCTAAGCCTGAAAGGCCCACAGGAACCTCAAACCTAGGTCGTGTATTTGGGAATAACTCCCATGTTTCAAGCAGCTGGATTCCTTCATTACGGCGAATTTCTTCAGCCAAATAG 1287 0.4002 MEWVVGGKFKIGCKIGSGSFGEIYIASDMDTSEIVAVKMEKKKTRHPQLLYEAKLYSILQGESGVPSMKWCGTDGDHNVLVIDLLGRSLEDLFVFCGSKFSLKTVLMLADQMLSRIEYMHSKGFLHRDIKPDNFLMGIRRKSSQVYIIDFGLGKRYKDPKTNKHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESIGYVLMYFLRGSLPWQGLKAVTKEEKYDKIREKKLSTSIEKLCESYPVEFTSYFHYCRSLTFDQDPDYGLLKRLFCDLFTREGYEHDNLFDWTILKHRQTQQTRRQVQPSDAVPSAVPTSLQPMIVENHTGSNNSPQITVTKLVSNLDRLNVRGQPKPSNVKNLNAKNHTGKHNVNNGPSTSSALPKLTTENVSKPERPTGTSNLGRVFGNNSHVSSSWIPSLRRISSAK 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05426 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Trre5g05426 428 FunFam CK1 family protein kinase 1 325 - -
Trre5g05426 428 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g05426 428 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Trre5g05426 428 SMART serkin_6 9 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g05426 428 PANTHER CASEIN KINASE-RELATED 10 348 - -
Trre5g05426 428 MobiDBLite consensus disorder prediction 351 414 - -
Trre5g05426 428 Gene3D Transferase(Phosphotransferase) domain 1 1 334 - -
Trre5g05426 428 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Trre5g05426 428 Pfam Protein kinase domain 11 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05426 Trre-Chr5 54949947 54954335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05426 8 213 EF-hand Containing Proteins AT2G17890 28.169 4.63e-15 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Trre5g05426 Pkinase 9.4e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05426 K08960 K08959 gmx:100792736 695.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05426 5 54949947 54954335 Trre1g00944 1 7174687 7179141 PCT