Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05415 ATGGAGAAGAGTGAAACGACGCTGGATTTAGCTTCTAGGAAATCGGTGAGGCAATTGGATTTCACTGCCGTCTATGAAGGTCCGGTACACCTGACATTGTCGCCACCGACGCCACGGTCACTTTCACAAACTATTCTACAGCCGCCGACGCAGTCACGTACTCCGGCGCAATTGCAGTTGGATTTTCAGTTACTAGGGCGACGGACGTGGTTATGTTCAGAGCCACGGTGGCAAGAGCAGAGAACGTCACAGTCTCCGCCGGTAATGCCACGTTTACGATCACCGGAATCACAGTTAGTTTCGCCGGTTCGTCGAATACAGAAACTTCCGGTGAAGAGGTTGCAAGTTGTGAAGCATGAATCTCCTAGTCCTAGATCACAGTCTCAAAATAATGCAGGATTAAAGGACAACACCCCAAAGAAACAAAAACATTGCAACTGCAAAAATTCTCGATGCCTTAAATTGTACTGTGAGTGCTTTGCAGCTGGGATCTATTGCGATGGTTGCAAGTGTATAAATTGTCATAATAATGTGGACAATGAGACTGCCCGGAAGGAGGCCATTGGAATAACACTGGAAAGAAATCCAAATGCTTTCAAACCAAAAATAGCAAGCAGTCCACAAAAACCAGAAGTTTCTATTGAGGAAGTGTCTGAAAATCAAGTAATAGGAAAGCACAATAAAGGATGCCACTGCAAGAAATCAGGTTGCCTTAAGAAGTATTGTGAGTGTTTCCAAGCCAACATCCTCTGCTCTGAAAATTGTAAATGCATGGACTGCAAGAATTTTGAAGGAAGTGACGAACGGAGAGCAGTTTTTCAAGAAGAGTGCCATCTAGTTCAAATCAGACAGGCAACTAATGCTTCCATTAGTGGAGCAGTTGGACCCTCCAGCTCTGGAACACACATAACACCCAAGAAGAGAAAAATCCAGGAAATATTTTCTGGCAAATCATTTGTAGATCAAACTGTTAACATGACTGCTCAATACCAACAGGAAGTTGATCCTATAGCTTCATCACCTTTATCCCTGTCAGCTTCCTTTGTTTCTGATACTGCCAACACAAGAACTTCAGGATCTTCAATATCTACGTACAGGTCTGTGTTGGCTGATGTCCTCCAGACACAGAGTGTGAAGAATCTTTGTTCGCTTTTAGTTGTTCTCTCCGGAGTAGCTGCAAATACAAATGCAGAAGTGAGAGGGGAAGTAGTTAGGAAAATAGGTCCCGGGAAATATGAAGCTTCTATTGCTTCATCAGCTCAACTGCTGCAAGACAGTAAATCTGTTCTCAAGCCTGTTTGTGAGAATCACGCAAATAAAGATGTTGCAGATGCAGTTGATATTGACATTCGTAATAGGCCACCTTCACCAGAAACACTTGAATTGATGTGTGATGAACAGGATGGGATGTTTTTCAGTAATGGTTCTGCAAATGGAGTTGCAATTGACAACACTTATCTGAACATGATTCAGAAGTCTTCCAATTCTGATGGATGCACCGATGCTTATGCACAGCAGGAAAGGCTTATCCTGACCAAGTTCAGGGATGTTCTTGGTGGACTCGTTACACTTGGTAGCATAAAAGAAACAAAGTACTCTTCACTAATAAAGAGAGATGTGGGAATCAAGAAAGGACCTACAGACAATGGTGATAGTGGTGTTGAAACTAATAAAATTATTGGCAACTGCACTACCAATAGCTCCATCCCAGCGGTTACGGAAGTATATGAGGCCGCCGATGCAAGAACTAATGGACATGATACTATTGATCTTTCATTGAGGTTACCTGCAGGTTGA 1797 0.4302 MEKSETTLDLASRKSVRQLDFTAVYEGPVHLTLSPPTPRSLSQTILQPPTQSRTPAQLQLDFQLLGRRTWLCSEPRWQEQRTSQSPPVMPRLRSPESQLVSPVRRIQKLPVKRLQVVKHESPSPRSQSQNNAGLKDNTPKKQKHCNCKNSRCLKLYCECFAAGIYCDGCKCINCHNNVDNETARKEAIGITLERNPNAFKPKIASSPQKPEVSIEEVSENQVIGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSDERRAVFQEECHLVQIRQATNASISGAVGPSSSGTHITPKKRKIQEIFSGKSFVDQTVNMTAQYQQEVDPIASSPLSLSASFVSDTANTRTSGSSISTYRSVLADVLQTQSVKNLCSLLVVLSGVAANTNAEVRGEVVRKIGPGKYEASIASSAQLLQDSKSVLKPVCENHANKDVADAVDIDIRNRPPSPETLELMCDEQDGMFFSNGSANGVAIDNTYLNMIQKSSNSDGCTDAYAQQERLILTKFRDVLGGLVTLGSIKETKYSSLIKRDVGIKKGPTDNGDSGVETNKIIGNCTTNSSIPAVTEVYEAADARTNGHDTIDLSLRLPAG 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05415 598 ProSiteProfiles CRC domain profile. 141 265 IPR005172 -
Trre5g05415 598 SMART CXC_2 140 180 IPR033467 -
Trre5g05415 598 SMART CXC_2 225 266 IPR033467 -
Trre5g05415 598 MobiDBLite consensus disorder prediction 120 136 - -
Trre5g05415 598 MobiDBLite consensus disorder prediction 35 55 - -
Trre5g05415 598 MobiDBLite consensus disorder prediction 76 145 - -
Trre5g05415 598 MobiDBLite consensus disorder prediction 34 55 - -
Trre5g05415 598 MobiDBLite consensus disorder prediction 76 91 - -
Trre5g05415 598 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 228 262 IPR005172 -
Trre5g05415 598 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 142 177 IPR005172 -
Trre5g05415 598 PANTHER TESMIN/TSO1-RELATED 34 522 IPR028307 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05415 Trre-Chr5 54847945 54852720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05415 10 550 CPP Transcription Factor Family AT4G29000 42.576 3.90e-126 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Trre5g05415 TCR 3.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05415 - K21776 gmx:100811459 735.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05415 5 54847945 54852720 Trre5g05415 5 54847945 54852720 ECH