Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05408 ATGGGAAGTGAGAGGAAAGTTCCTGCTTCATCAGATACTGTACAGAAAATTAGACCGTTACATGGGAGGACTACTGGCCCTACAAGGCGCTCCACTAAAGGACAATGGACGGCTGAGGAGGATGAAATTTTGAGGAAGGCTGTTGAGCATTTTCAAGGAAAGAATTGGAAAAAAATAGCCGAGTCTTTCAAGGATAGAACAGATGTACAATGCCTGCATAGGTGGCAAAAAGTCTTAAATCCCGAACTTATCAAAGGTCCTTGGTCTAAAGAGGAAGATGAAGCAATTATTGATTTGGTAAACAAATATGGGCCTAAAAAGTGGTCTACTATAGCACAGCATTTACCCGGACGTATCGGTAAGCAATGTCGAGAAAGGTGGCATAATCACCTTAATCCTTCTATAAACAAGGAAGCATGGACACAGGAAGAAGAGTTGGCTCTAATACATGCTCATAATATTTATGGGAATCGATGGGCAGAATTATCGAAGTTTTTGCCTGGAAGGACAGACAATGCTATAAAGAACCACTGGAATAGTTCTGTAAAAAAAAAGTTGGACTCTTACTTGGCGTCGGGATTGCTTGCTCAGTTTCAAAATGTACCTCTTGTTGGAAATCTTCATCAACCTATTGCGTCATCCTCTGATAGGTTGCAATATAGTGTAGATGATAATGGTCCTACAGTGACTGAAGGTGAGGAAGTTTCACGGTGTAGCCAGGAATCCGCTAATGCCGGTCACTTTCCGTCTGACAGAGAGTTGAGTATTGTTATACAAAATGGGGAGGAGTACAGGTCAAATGAAGAATCTAATCAAGCAACATGTTCAGAGATATATTACATGTCTTTGGATGATATTACTCGCCAAGAATCATTTGAGCATAAATATTCAAACGAACCTGGAAGCTCCTCCACAGACGTGGATTGCCAATTTAATTTACATGCCTTGCCTAATATTTCCTCGCATGACGTTGGGCAGGAACCATCACAGTTCCAAAATGATACTTTAGCTCCTAGTGAAAGTCATAACATGATGATTGTTCCATATGACTATCAGCCTTCATCTATGGACAATGATGCTAAAGGTGAACAAAACATGTTGATAACTGATGATGATTGTTGCAGATTCCTATTTTCAGAGGCAATGAGAGATGAATGCTTTTCATCTGGAGGAGTAAATAATGTTGACTTGTCTGGAAGCACTTCATCTCTTTGTCAATCTGGTGATAGAATGATGATGATGCATACTGCTGAAGCCAATCAGTTGGTAGGCTCTGAGGATCAAAAGTATGTCTCAAGAGAACATGATGGCTTGGTTTATGACAATGATAACGATAGGATAGATGTTGTGAAAGCTGATAACTTAAAATCGGTCCCCGTAAATAGTTCTGGCTGTGGGTCAGATACTATGCAAACATGCTATCCAACTGATGAAAAGCCAAATGTACATATACAACAGGATGAAACAGGAGGAGCTTTATGTTATGAACCACCTCGTTTTCCATGCTTGGATATACCTTTCTTGAGCTGTGATCTTGTACAATCCGGGGATATGCAGCAAGAATTTAGTCCGTTGGGTATCCGCCAGTTTATGATGTCTTCTATGAACTGTCTTACTCCTTTAAGATTGTGGGACTCACCTTCTCGCATTGATAGTCCAAATGCTTTGTTAACAAGTGCAGCCAAAACATTCACTAGTACACCATCCATAATGAAGAAGAAGAAACGAAACAGAGACCTTTTAACTCCACTGTCAGATAGAAGAATGGAGAAAAAGCATGAGATCGACATGACATCAACTTTGATCAGAAACTTTTCCCGTTTGGATGTCATGTTTGATGACGAGAATCAAGGTATTGAAGATGATAAAGAAAATTGTGTACCAGCTTTTATGGTGGGGGAGAAAAGTAACTCTCAGGAGAAGATTGAGCAGCCTCCTCTTGATGCCGATTCTAAGATGAAGAATGATATTGATACTGCTGCTGAAATTGTGCAACAGCCTTCTAGAGTTTTGGTTGAACGTGATATGAATGATCCCTCGCTGTATTCTCCTAGTCAAATTGGTTTGAAATCAGATATAGTTCTGAGTTTAAGTGCTAGAAGTCATAAAAACCCAGTCTCAAGACTTAACTCTCCTTGTGTTCGTTTAAAGGAGCACGAAAGACTCTCAGTTTCTGTTACTTGTGTACAATCCATATGTTCATCGTCAGGCCCAGGAGAGAATATGGGCGATCAAACTGGAAACGATGATAGTTTTGAAACAAATTGCATTTTTGGCGGAACACCTTTTAGGAAAAGCTTTGAATCACCTTCAGCATGGAAATCCCCCTTGTTCATCAGCACTTTTTTGTCTAGCCCCAGGATTGATACTGAAATTACAATTGAGGACTATGGATGTTTCTTTAGCCCGGGCGATAAAAGCTATGATGCAATCGGATGGTTGAAACAAATTGAAGAACACACTGCTGCTCAATATGCCAATGCTCTAGAAGTCTTGGAAAATGAAACTCCTAAGGCATTAACAAAAGATCCATCTGGAAGCGACCATGAAAATAACGATCCTCATAATCAACCTACGAACCATTCTCCGTCTTCAAATGTTTTGGTTGAGCGACGCATGCTTGACTTCAGCGAATGTGTATCTCCAGACAAGGGTGACAAGGGAAAATCCTCAGCTATAAGCATTTCAAGTCCTTCTTCGTATTTGTTGTAG 2712 0.4027 MGSERKVPASSDTVQKIRPLHGRTTGPTRRSTKGQWTAEEDEILRKAVEHFQGKNWKKIAESFKDRTDVQCLHRWQKVLNPELIKGPWSKEEDEAIIDLVNKYGPKKWSTIAQHLPGRIGKQCRERWHNHLNPSINKEAWTQEEELALIHAHNIYGNRWAELSKFLPGRTDNAIKNHWNSSVKKKLDSYLASGLLAQFQNVPLVGNLHQPIASSSDRLQYSVDDNGPTVTEGEEVSRCSQESANAGHFPSDRELSIVIQNGEEYRSNEESNQATCSEIYYMSLDDITRQESFEHKYSNEPGSSSTDVDCQFNLHALPNISSHDVGQEPSQFQNDTLAPSESHNMMIVPYDYQPSSMDNDAKGEQNMLITDDDCCRFLFSEAMRDECFSSGGVNNVDLSGSTSSLCQSGDRMMMMHTAEANQLVGSEDQKYVSREHDGLVYDNDNDRIDVVKADNLKSVPVNSSGCGSDTMQTCYPTDEKPNVHIQQDETGGALCYEPPRFPCLDIPFLSCDLVQSGDMQQEFSPLGIRQFMMSSMNCLTPLRLWDSPSRIDSPNALLTSAAKTFTSTPSIMKKKKRNRDLLTPLSDRRMEKKHEIDMTSTLIRNFSRLDVMFDDENQGIEDDKENCVPAFMVGEKSNSQEKIEQPPLDADSKMKNDIDTAAEIVQQPSRVLVERDMNDPSLYSPSQIGLKSDIVLSLSARSHKNPVSRLNSPCVRLKEHERLSVSVTCVQSICSSSGPGENMGDQTGNDDSFETNCIFGGTPFRKSFESPSAWKSPLFISTFLSSPRIDTEITIEDYGCFFSPGDKSYDAIGWLKQIEEHTAAQYANALEVLENETPKALTKDPSGSDHENNDPHNQPTNHSPSSNVLVERRMLDFSECVSPDKGDKGKSSAISISSPSSYLL 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05408 903 MobiDBLite consensus disorder prediction 879 903 - -
Trre5g05408 903 Gene3D - 138 197 - -
Trre5g05408 903 CDD SANT 36 79 IPR001005 -
Trre5g05408 903 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 80 135 IPR017930 -
Trre5g05408 903 ProSiteProfiles Myb-like domain profile. 28 79 IPR001005 -
Trre5g05408 903 CDD SANT 139 179 IPR001005 -
Trre5g05408 903 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 28 79 IPR017930 -
Trre5g05408 903 ProSiteProfiles Myb-like domain profile. 132 182 IPR001005 -
Trre5g05408 903 SMART sant 84 133 IPR001005 -
Trre5g05408 903 SMART sant 136 184 IPR001005 -
Trre5g05408 903 SMART sant 32 81 IPR001005 -
Trre5g05408 903 ProSiteProfiles Myb-like domain profile. 80 131 IPR001005 -
Trre5g05408 903 MobiDBLite consensus disorder prediction 851 867 - -
Trre5g05408 903 FunFam Transcriptional activator Myb isoform A 85 137 - -
Trre5g05408 903 CDD SANT 87 131 IPR001005 -
Trre5g05408 903 Gene3D - 26 84 - -
Trre5g05408 903 MobiDBLite consensus disorder prediction 1 37 - -
Trre5g05408 903 MobiDBLite consensus disorder prediction 838 867 - -
Trre5g05408 903 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 136 186 IPR017930 -
Trre5g05408 903 PANTHER MYB PROTEIN-RELATED 33 106 - -
Trre5g05408 903 SUPERFAMILY Homeodomain-like 34 89 IPR009057 -
Trre5g05408 903 FunFam Transcription factor MYB3R-2 138 200 - -
Trre5g05408 903 Coils Coil 815 835 - -
Trre5g05408 903 Pfam Myb-like DNA-binding domain 33 79 IPR001005 -
Trre5g05408 903 Pfam Myb-like DNA-binding domain 85 131 IPR001005 -
Trre5g05408 903 Pfam Myb-like DNA-binding domain 137 179 IPR001005 -
Trre5g05408 903 FunFam Transcriptional activator Myb isoform A 32 84 - -
Trre5g05408 903 Gene3D - 85 136 - -
Trre5g05408 903 SUPERFAMILY Homeodomain-like 82 178 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05408 Trre-Chr5 54783335 54788389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05408 1 885 MYB Transcription Factor Family AT4G32730 42.200 0.0 655
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre5g05408 Myb_DNA-binding 1.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05408 - K09420 psat:127084879 1500.34