Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05388 ATGGAAAGGGAACGAACTCGTAAACGACCTCGTCTCGCTTGGGATGCAGCACCACCTCCCTCAATTCCACCGGCACAGAGAACTTCGGCGGTAGTTGGTGATGAAGGAATCGAAAAAAAGTATGCATCGCCGCCGAGGAGAGACGACGATCGCGATGGTCATTATGTGTTTAATCTTGGCGAAAATCTCACTCCTAGATATAAAATTCTCAGCAAGATGGGTGAAGGCACCTTTGGTCGAGTTTTGGAATGTTGGGATCGTCAAACAAGAGATTATGTAGCAATCAAGGTAATTAGAAGCATCAAGAAATATCGCGACGCAGCAATGATCGAGGTTGATGTGCTTGAACGTCTTACGAAGAGTGATGTGGGATGCTCACGCTGTGTACAGATCTTAAATTGGTTCGATTACCGGAATCACATATGCATTGTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAATACTGCCCATTCCCTGTGGATCTTGTTCGTGAATTTGGACGACAGCTTTTGGAATCTGTAGCATATATGCATGAACTGCGCCTAATCCACACTGACCTGAAGCCTGAAAACATACTTCTTGTTTCTTCTGACTATGTAAAACTTCCTAGTTGTAAGAGGGTTTTGTCAGATGAAACACAATTTAGGTGCTTGCCCAAGTCTAGTGCTATTAAGCTGATTGATTTTGGAAGTACTGCATTTGCAAATCAGAGCCATAGCTCCATTGTTTCTACAAGGCATTACAGAGCCCCCGAGGTTATCTTAGGTCTAGGGTGGTCAACTCCATGTGATTTGTGGAGTGTTGGATGTATTCTCATCGAATTATGCACGGGAGGAGCGTTATTTCAGACACATGAAAATTTGGAGCACCTGGCAATGATGGAGAGAGTTCTGGGACCTTTACCACAGCATATGGTTCAAAGATCTAAGGGTGTCGAAAAGTATTTCAAGCGTGGATCACGACTAAGATGGCCTGAAGGCGCTGTTTCAAGGGAGAGCATAAATGCAGTGAAGAAGCTTGGTCATCTCAAGGATATTATATCAAGTCATGTCGAATCTTCAAGGTCCTTATTAACTGATTTGTTATATGGCTTATTAACATATGATCCCGCCAAACGTATTACTGCTTGCGAAGCCCTTGATCATCCTTTCTTTAGAATTCCAACATAA 1188 0.4276 MERERTRKRPRLAWDAAPPPSIPPAQRTSAVVGDEGIEKKYASPPRRDDDRDGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTRDYVAIKVIRSIKKYRDAAMIEVDVLERLTKSDVGCSRCVQILNWFDYRNHICIVFEKLGPSLFDFLKRNKYCPFPVDLVREFGRQLLESVAYMHELRLIHTDLKPENILLVSSDYVKLPSCKRVLSDETQFRCLPKSSAIKLIDFGSTAFANQSHSSIVSTRHYRAPEVILGLGWSTPCDLWSVGCILIELCTGGALFQTHENLEHLAMMERVLGPLPQHMVQRSKGVEKYFKRGSRLRWPEGAVSRESINAVKKLGHLKDIISSHVESSRSLLTDLLYGLLTYDPAKRITACEALDHPFFRIPT 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05388 395 SMART serkin_6 67 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g05388 395 CDD PKc_CLK 54 391 - -
Trre5g05388 395 ProSiteProfiles Protein kinase domain profile. 67 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g05388 395 Pfam Protein kinase domain 67 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g05388 395 FunFam Serine/threonine-protein kinase AFC2 54 147 - -
Trre5g05388 395 SUPERFAMILY Protein kinase-like (PK-like) 54 392 IPR011009 -
Trre5g05388 395 FunFam Serine/threonine-protein kinase AFC2 143 391 - -
Trre5g05388 395 Gene3D Transferase(Phosphotransferase) domain 1 121 391 - -
Trre5g05388 395 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 29 392 - -
Trre5g05388 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Trre5g05388 395 Gene3D Phosphorylase Kinase; domain 1 54 147 - -
Trre5g05388 395 MobiDBLite consensus disorder prediction 1 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05388 Trre-Chr5 54574045 54577367 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05388 57 283 MAP Kinase Kinase Kinase AT3G13530 31.197 3.51e-27 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Trre5g05388 Pkinase 1.1e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05388 K08287 - gmx:100782453 687.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05388 5 54574045 54577367 Trre5g05388 5 54574045 54577367 ECH