Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05384 ATGGAAGAAAGTGGTGGAAAGGAGGAAACCCTACCGCCGGGATTTCGATTTCATCCTACAGATGAAGAACTTATCACTTGCTATCTTATAAATAAGATATCAGATTCTAGTTTTACAGGCAAAGCAATAACTGATATAAATCTCAATAAATCTGAACCATGGGAGCTACCAGGGAAAGCAAAGATGGGAGAAAAGGAATGGTACTTTTTTAGTATGAGAGATCGTAAATATCCAACTGGTGTGAGAACCAATCGAGCAACTAACAGTGGATACTGGAAGACCACAGGGAAAGACAGAGAAATATTCAACAGTGTTACATTAGAATTGGTTGGTATGAAAAAGACTTTGGTTTTTTACAAAGGAAGAGCTCCAAGAGGAGAGAAAAGTAATTGGGTCATGCATGAATACCGCATTCACTCTAAATCAACATTTCGAACAAACAAGCAGGAAGAATGGGTGGTATGTCGGATATTCAAGAAGAGTGGTAGTGGAAAAAAGTACCCTTGTAATTCCAATTCCAACCATACAAGAGCAGGATTGAATCCTTATAGCATGCAGGAAATAGGTTCTAGTAATATGGTGTCAATTCCACCACAAATGATGCAGTACTACCTTCAGGGACTGCTTGGAGATCCTTCTACTCCTCATTTCCTTTGCGGACGGAACATTAACGGCTCAAATGCAGAGGTTTTAAGAGGAGGAACAATGCAATCTCATCATCAGATGAACTATCCTTCAATGTTGCCAGCAACTACAGGAGAAGGAGGAGGATTCAGCATTTCAGGTCTTAATTTGAACCTTGGATCAGGTGGAGGAGCTACCACAACAACACAACCTATTTTGACCTCAATACAACATTCTCAATATGCAATGGCAGATAATGTCAGTTCAATAAACATGAATATGAATTCTGTTAGTGCAGATCAGAATATTAATAATTTTGTAGGTTATAATAATGGTGTGGAGCATTGCATGGATCTTGAAACTTACTGGCCTAATTCCTACTAA 1008 0.3879 MEESGGKEETLPPGFRFHPTDEELITCYLINKISDSSFTGKAITDINLNKSEPWELPGKAKMGEKEWYFFSMRDRKYPTGVRTNRATNSGYWKTTGKDREIFNSVTLELVGMKKTLVFYKGRAPRGEKSNWVMHEYRIHSKSTFRTNKQEEWVVCRIFKKSGSGKKYPCNSNSNHTRAGLNPYSMQEIGSSNMVSIPPQMMQYYLQGLLGDPSTPHFLCGRNINGSNAEVLRGGTMQSHHQMNYPSMLPATTGEGGGFSISGLNLNLGSGGGATTTTQPILTSIQHSQYAMADNVSSINMNMNSVSADQNINNFVGYNNGVEHCMDLETYWPNSY 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05384 335 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 246 - -
Trre5g05384 335 SUPERFAMILY NAC domain 9 160 IPR036093 GO:0003677|GO:0006355
Trre5g05384 335 Gene3D NAC domain 20 164 IPR036093 GO:0003677|GO:0006355
Trre5g05384 335 ProSiteProfiles NAC domain profile. 11 160 IPR003441 GO:0003677|GO:0006355
Trre5g05384 335 FunFam NAC domain-containing protein 100-like 20 164 - -
Trre5g05384 335 Pfam No apical meristem (NAM) protein 12 138 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05384 Trre-Chr5 54556590 54558642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05384 2 333 NAC Transcription Factor Family AT2G24430 51.268 2.57e-106 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre5g05384 NAM 1.2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05384 - - lja:Lj1g3v2035130.1 400.979