Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05381 ATGGCATCAACGGAATCAGATCTAGATGAGTTTCTCAATCTCGATTACCAACTTCGTTATCCAACTCTTGCCGATACTGAACCATTCATGTCCGGCGTTTGCTCCGCCGCTTTTCAAACTCTGTTACCGGATGCAGTGACTTCATTTTCAACTTGTGGTGGCCTAACAGACTCCCAAAACTTTACTTCCAAACATTCCACCATCACTGCTACTATTGATTCTCAATCATCAATTTATGGCACTGTTGGAAGCCCAGTTTCAGCTAATAAACCAAACAGCAGAGAGAATCATACCAAAGGGACTTCAAGTGGTTCCTCTGATCCTTCTGATGAGGATGATGAATTAGGTCGTTGTGAACAAAGCACAAATCCACTTGATATCAAACGCCTTAGAAGGAAGGATTCTAATCGCGAGTCAGCCAGGAGGTCAAGGCTAAGAAAACATGCACATTTGTCTGAACTTGAGTCTCAGGTTGAAAAGCTGAAACTGGAAAATGCAACCCTATACAAGCAGTTTACAGATACTAGTCAACAATTTCATGAAGCCGATACAAATAACCGAGTGCTAAAATCAGATGTAGAAGCTTTGAGAGCTAAGGTGAAGTTAGCTGAAGATATGGTCACTAGAAGCTCTTTCACCACATCCTTAAACAATCAATTTCTTCACAATCAATGTCAATTGAGCACACCACCACAACTCAACGCGACTAATATTCGTCGCATGCCACATGTCTCGCCAACCATCAATGTCCAGCAGGGAAATGGTGCCTCGTACGGTGGTGTTGCGTTTGGTGAACACAATTCAAATCTTGTTGGATTTGGAAACTTGGACATGAGTAATTTCGACGTTGTCGACAATGGAGTCCTAAGCAATGCTTTGAGCTGTGTGACTATGTGGCCTTAA 903 0.4252 MASTESDLDEFLNLDYQLRYPTLADTEPFMSGVCSAAFQTLLPDAVTSFSTCGGLTDSQNFTSKHSTITATIDSQSSIYGTVGSPVSANKPNSRENHTKGTSSGSSDPSDEDDELGRCEQSTNPLDIKRLRRKDSNRESARRSRLRKHAHLSELESQVEKLKLENATLYKQFTDTSQQFHEADTNNRVLKSDVEALRAKVKLAEDMVTRSSFTTSLNNQFLHNQCQLSTPPQLNATNIRRMPHVSPTINVQQGNGASYGGVAFGEHNSNLVGFGNLDMSNFDVVDNGVLSNALSCVTMWP 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05381 300 Coils Coil 186 206 - -
Trre5g05381 300 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 131 146 IPR004827 GO:0003700|GO:0006355
Trre5g05381 300 SUPERFAMILY Leucine zipper domain 127 179 IPR046347 GO:0003700|GO:0006355
Trre5g05381 300 SMART brlzneu 124 188 IPR004827 GO:0003700|GO:0006355
Trre5g05381 300 PANTHER BASIC LEUCINE ZIPPER 63 57 254 - -
Trre5g05381 300 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 126 189 IPR004827 GO:0003700|GO:0006355
Trre5g05381 300 Pfam bZIP transcription factor 127 172 IPR004827 GO:0003700|GO:0006355
Trre5g05381 300 MobiDBLite consensus disorder prediction 82 105 - -
Trre5g05381 300 Coils Coil 151 171 - -
Trre5g05381 300 CDD bZIP_plant_GBF1 129 180 IPR045314 GO:0003700|GO:0006355
Trre5g05381 300 Gene3D - 127 183 - -
Trre5g05381 300 MobiDBLite consensus disorder prediction 82 124 - -
Trre5g05381 300 FunFam BZIP transcription factor 126 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05381 Trre-Chr5 54534512 54539340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05381 73 300 bZIP Transcription Factor Family AT5G24800 47.009 5.25e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre5g05381 bZIP_1 4.6e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05381 K25784 - gmx:780555 354.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05381 5 54534512 54539340 Trre5g05381 5 54534512 54539340 ECH
Trre5g05381 5 54534512 54539340 Trre1g00847 1 6428157 6432960 PCT