LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre5g05364	ATGTGGTTGCCAAAGAGTTCAGAGAAGAAGGATGGTGTAAATGGATTAATAGCAGTGGCAATAGATAAAGAAAAGGGGAGCCAAAATGCACTCAAATGGGCTATTGACAATCTCCTCTCAAGAAGTGCAACTGTAATTCTCATCCATGTCAAGATTTTGGCACCTTCTCTTTCTTTATCACCTTCTATTTTCGCCCTAAAGGCAGCAGGGATCAATCTTAATGGTCATGACAGTTTACCTCCAGAAGCTCAAAAAAACATTTTCCTCCCATATCGCGTCTTCTGTACACGCAAAGATATACAATGCAAGGATGTACTGCTAGAAGATACAGATGTATCCAAAGCATTGATTGACTATGCTTCTCAGGCAGGAATTGAGCATTTGATTCTTGGCTCTTCAGCAAAAACTAGTTTGCTCAAAAGATTCAAGGTATCAGATATTCCTGGAGCAGTGTCAAAAGGCGCACCGGATTTCTGTACAGTCTATATTATTGGCAAAGGAAAGATTCAATCGATGCGATCTGCATCTCGTCCTGCTCCAGCGATTTTTCCTCTACAAGTCAATCAAACTACTATCAAACCAGACCAATCAGACACAAATGTAGTGTTGGAACAAAGTGTAAAAGAACATGAAAGGCATTCTTTTGAAGCTGCGCCACGTCATTCGTATGATGAACTAGATTTATTCAAATCACCACTCACTAGGAAAGGTTACAATACAAAACAATATTTAGAAAATAAGGCAGATGGTGATATATCATTTGTAAGTACCGGAAGGCATAGTATCGAACGAATGTTGCCTCCGTTGTATAACAACTCAGAGTCGGGACCTAGGACATCATGCGGCTCAGATCCAGATGAAAGCAGCAGCTTTGATTCTATCTTTCAAGGAAGGAAGTCTACGGAGTCCTTCCTTCCTCCTGAATTTACATCCCTCTCATTCGATAGCGAAAGGCTTTCGTCTTCTACATCACAAGCCGTGGATGATATGGAGGCTGAAATGAGAAGATTAAAGTTGGAGCTGAAGCAAACAATGGAAATGTACAACACAGCTTGTAAAGAAGCACTCACAGCACAGCAGAAGGCAATAGAACTTCAAAAATGGAAAATGGAAGAAGAAAAGAGATTAGAAGAAGCAAGGCTAGCCGAGGAAGCTGCATTGGCAATTGCAGAAAAGGAGAAAGAAAAATCTAAAGCAGCCATTGAGGCTGCTGAAGCACAAAAGAGAATAGCAGAATTGGAATCACAGAAGAGACTTCAAGCAGAAATGAAAGCACTTAAAGAAGCAGAAGAAAAAAGAAAAGTAATGGATGCGTTGGTTAATGTAGATGTCAGGTATAGAAAGTATACAATTGAGGAGATTGAAGCTGCAACAGAATTTTTTTCGAAGTCACTCAAGATCGGAGAAGGAGGATATGGTCCAGTTTTTAAGTGTCTTCTGGACCATACACCTGTTGCAGTTAAGGTTCTTCGTCCTGATGCGGCACAAGGAAGGTCACAATTTCAAAGAGAGGTTGAGGTACTGAGCTGCATACGACATCCAAACATGGTTCTCCTCTTAGGAGCTTGTCCTGAATACGGATGCCTAGTGTATGAGTACATGTCAAATGGAAGCTTAGACGATTGCCTATTTTGTCGAGGAAACAGTCCTCCACTTTCTTGGCAGCTAAGATTCAAAATTGCAGCCGAAATCGGAACCGGCTTGTTGTTCCTTCACCAAGCAAAACCAGAACCTATAGTACACAGAGATTTAAAACCAGGAAACATCTTACTAGACAGAAACTATGTAGCCAAAATCAGTGATGTAGGTTTGGCAAGACTAGTTCCACCGTCTGTAGCTGACAGTGTGACACAATACCGCATGACAGAAACAGCAGGAACTTTCTGTTATATCGATCCCGAGTATCAACAAACAGGAATGTTAGGTGTGAAATCAGATATATATTCTCTTGGGATCATTTACCTTCAAATTTTGACAGCAAAACCACCAATGGGTTTGGCACATAACGCTCAAAAAGCCATTGAGAAAGGAACTTTTACTGAGATGCTGGATCCTTTAGTGACTGATTGGCCAATGGAGGATGTTATTATTTTAGCAAAGATTGCCGTTCAGTGTGCCGAGTTAAGGCGGAAAGATAGACCTGATCTTGGTAATGTTGTACTACCTGAACTTGAAAGATTGAAAGAACTTGCCGAAAATAGTGACCAAAATTCAACAAATGATAGTAGTAGCCCTATAAATATGTCCCATGAGAGACAAGTTTCGTTGCCGCTGGATGAAAGCTGTCCTCCATTTCCTCATTCAGGGGAGATTAGAAGAAACACAACAGTTGGTGTCTGA	2340	0.409	MWLPKSSEKKDGVNGLIAVAIDKEKGSQNALKWAIDNLLSRSATVILIHVKILAPSLSLSPSIFALKAAGINLNGHDSLPPEAQKNIFLPYRVFCTRKDIQCKDVLLEDTDVSKALIDYASQAGIEHLILGSSAKTSLLKRFKVSDIPGAVSKGAPDFCTVYIIGKGKIQSMRSASRPAPAIFPLQVNQTTIKPDQSDTNVVLEQSVKEHERHSFEAAPRHSYDELDLFKSPLTRKGYNTKQYLENKADGDISFVSTGRHSIERMLPPLYNNSESGPRTSCGSDPDESSSFDSIFQGRKSTESFLPPEFTSLSFDSERLSSSTSQAVDDMEAEMRRLKLELKQTMEMYNTACKEALTAQQKAIELQKWKMEEEKRLEEARLAEEAALAIAEKEKEKSKAAIEAAEAQKRIAELESQKRLQAEMKALKEAEEKRKVMDALVNVDVRYRKYTIEEIEAATEFFSKSLKIGEGGYGPVFKCLLDHTPVAVKVLRPDAAQGRSQFQREVEVLSCIRHPNMVLLLGACPEYGCLVYEYMSNGSLDDCLFCRGNSPPLSWQLRFKIAAEIGTGLLFLHQAKPEPIVHRDLKPGNILLDRNYVAKISDVGLARLVPPSVADSVTQYRMTETAGTFCYIDPEYQQTGMLGVKSDIYSLGIIYLQILTAKPPMGLAHNAQKAIEKGTFTEMLDPLVTDWPMEDVIILAKIAVQCAELRRKDRPDLGNVVLPELERLKELAENSDQNSTNDSSSPINMSHERQVSLPLDESCPPFPHSGEIRRNTTVGV	779

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre5g05364	779	Gene3D	Transferase(Phosphotransferase) domain 1	534	753	-	-
	Trre5g05364	779	FunFam	U-box domain-containing protein 51	534	734	-	-
	Trre5g05364	779	CDD	STK_N	16	167	-	-
	Trre5g05364	779	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	17	142	-	-
	Trre5g05364	779	Gene3D	HUPs	16	164	IPR014729	-
	Trre5g05364	779	PANTHER	OS02G0152300 PROTEIN	17	747	-	-
	Trre5g05364	779	SUPERFAMILY	Protein kinase-like (PK-like)	444	720	IPR011009	-
	Trre5g05364	779	Coils	Coil	373	439	-	-
	Trre5g05364	779	MobiDBLite	consensus disorder prediction	272	293	-	-
	Trre5g05364	779	Pfam	Protein kinase domain	463	694	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre5g05364	779	ProSiteProfiles	Protein kinase domain profile.	461	727	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre5g05364	779	Coils	Coil	320	347	-	-
	Trre5g05364	779	Pfam	Universal stress protein family	17	142	IPR006016	-
	Trre5g05364	779	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	433	533	-	-
	Trre5g05364	779	SMART	serkin_6	461	727	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre5g05364	779	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	579	591	IPR008271	GO:0004672\|GO:0006468
	Trre5g05364	779	MobiDBLite	consensus disorder prediction	756	779	-	-
	Trre5g05364	779	MobiDBLite	consensus disorder prediction	268	293	-	-
	Trre5g05364	779	Gene3D	Phosphorylase Kinase; domain 1	440	533	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre5g05364	Trre-Chr5	54400628	54404566	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre5g05364	1	757	Receptor kinase-like Gene Family	AT1G78940	55.656	0.0	769

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Trre5g05364		Pkinase	1.4e-39	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre5g05364	-		-	gmx:100803867	1062.75