Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05362 ATGCAACAGAGACTCAAGCTGCAGCAGCAACAACAACAACAACAACAAGCACTCATGCAGCAAGCTTTGCTTCAGCAACAGCAGATGTACCATCACCCTGGCATGCTCGCCGCTGCCGCTATGACTCAGATGGAGCCTGTACCAAGTGGAAATCTGCCTCCTGGTTTTGATGCTTCTGCATGCCGTAGCGTTTATGTAGGAAATATTCATGTAAATGTCACTGATAAACTTCTTGCGGAAGTTTTTCAGAGTGCTGGCCCTCTTGCCGGGTGCAAGCTCATAAGAAAAGAAAAGTCCTCTTATGGTTTTGTGGACTACCATGATCGAGCATCCGCAGCGCTTGCAATAATGACATTGCATGGAAGACAACTATATGGTCAAGCACTCAAGGTGAATTGGGCATATGCCAATAGCAGTAGGGAGGATACCTCAGGGCACTTCAATGTATTTGTTGGTGATTTGAGTCCAGAGGTTACTGATGCAACTTTATTTGCATGCTTCTCAGTCTATACTACTTGTTCTGATGCTAGGGTTATGTGGGATCACAAAACTGGCCGCTCAAAAGGATATGGTTTTGTTTCTTTCCGTGATCATCAGGATGCCCAAAGTGCCATCAATGATATGACGGGTAAATGGCTGGGAAATAGGCAAATAAGATGCAATTGGGCAACTAAAGGAGCTGGTGGTAGCTCAAGTGAAGAGAAAATTAATGACAGCCAAAATGCTGTTGTGCTTACAAATGGATCTTCAGATGGAGGTCAAGATAATGGCAACGAGGATGCTCCTGAAAACAATCCTTCATACACAACAGTTTATGTTGGCAACCTTCCCCATGATGTAACACAAGCTGAACTCCACTGTCAATTCCATGCATTGGGGGCTGGGGTACTTGAGGAGGTCCGAATTCAGAGGGATAAGGGTTTTGGATTTGTCAGATACAACACTCACGAGGAAGCAGCATTGGCCATTCAGATGGCTAATGGGAGACCAGTTCGTGGGAAGACTATGAAGTGTTCATGGGGTAGCAAACCAACTCCTCCTGGGACAGCGTCAAATCCATTACCTCCTCCTGCTGCACAACCATATCAAATACTTCCTACTGCAGGGATGAACCAAGGCTATTCTTCGCCCGCTGAGTTGTTGGCTTATCAGCGCCAGTTAGCCTTGAGTCAGGCCGCAGTATCCGGCCTTTCAGGACAAGCTCTTCTTCAAATGTCTGGACAGCATGGCCTAGCTCCTGCTTCAATGGGTATAAACTCTGCAGCATCTCAAGCCATGTATGACGGATATACTGGTAATTCGTCAAGACAGCAGCTTATGTACTATCGTTGA 1332 0.4617 MQQRLKLQQQQQQQQQALMQQALLQQQQMYHHPGMLAAAAMTQMEPVPSGNLPPGFDASACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANSSREDTSGHFNVFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGGSSSEEKINDSQNAVVLTNGSSDGGQDNGNEDAPENNPSYTTVYVGNLPHDVTQAELHCQFHALGAGVLEEVRIQRDKGFGFVRYNTHEEAALAIQMANGRPVRGKTMKCSWGSKPTPPGTASNPLPPPAAQPYQILPTAGMNQGYSSPAELLAYQRQLALSQAAVSGLSGQALLQMSGQHGLAPASMGINSAASQAMYDGYTGNSSRQQLMYYR 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05362 443 SMART rrm2_1 148 221 IPR003954 GO:0003676
Trre5g05362 443 SMART rrm2_1 270 339 IPR003954 GO:0003676
Trre5g05362 443 FunFam Nucleolysin TIAR-like protein 146 244 - -
Trre5g05362 443 MobiDBLite consensus disorder prediction 244 267 - -
Trre5g05362 443 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 147 225 IPR000504 GO:0003723
Trre5g05362 443 SMART rrm1_1 148 221 IPR000504 GO:0003723
Trre5g05362 443 SMART rrm1_1 63 132 IPR000504 GO:0003723
Trre5g05362 443 SMART rrm1_1 270 339 IPR000504 GO:0003723
Trre5g05362 443 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 64 130 IPR000504 GO:0003723
Trre5g05362 443 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 149 219 IPR000504 GO:0003723
Trre5g05362 443 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 271 337 IPR000504 GO:0003723
Trre5g05362 443 CDD RRM2_PUB1 146 225 - -
Trre5g05362 443 SUPERFAMILY RNA-binding domain, RBD 46 140 IPR035979 GO:0003676
Trre5g05362 443 Coils Coil 7 27 - -
Trre5g05362 443 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 62 136 IPR000504 GO:0003723
Trre5g05362 443 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 269 343 IPR000504 GO:0003723
Trre5g05362 443 MobiDBLite consensus disorder prediction 334 358 - -
Trre5g05362 443 SUPERFAMILY RNA-binding domain, RBD 255 347 IPR035979 GO:0003676
Trre5g05362 443 Gene3D - 1 143 IPR012677 -
Trre5g05362 443 Gene3D - 144 241 IPR012677 -
Trre5g05362 443 FunFam Nucleolysin TIAR-like protein 1 145 - -
Trre5g05362 443 SUPERFAMILY RNA-binding domain, RBD 142 253 IPR035979 GO:0003676
Trre5g05362 443 FunFam Oligouridylate-binding protein 1C 246 347 - -
Trre5g05362 443 Gene3D - 247 347 IPR012677 -
Trre5g05362 443 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 43 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05362 Trre-Chr5 54378898 54386207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05362 51 343 Eukaryotic Initiation Factors Gene Family AT1G71770 26.316 1.13e-20 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05362 K13201 - gmx:100790916 803.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05362 5 54378898 54386207 Trre5g05362 5 54378898 54386207 ECH