Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05358 ATGGAGCTCAAAAATGAAAAACTAGCCAGGTTCTCCAATGATGGAAAATTTAATCTTGAGAAGCCAATGCAATTTTACAAGATTCCAAAAATTCTTGTTCCGGACGGAAAAATAAGTATTGGTGATACAGATAATGATAAGAATAGAATGAATATTAAATTTCCAAGAAATCATGAACAATGGAAGAAGAGAATTCTTGATCCAGGAAGTGATATCTTTCTGGAATGGAAAAGGGCTTTCTTATTTTCTTCTATACTATCACTTTTTGTTGATCCATTGTTTTTCTACCTTCCCTCAGTAGCAATAGCAACTGATAAGAGTTCATCATGCATGGTTACTGATTTGAATTTAGGAATTGTTGTCACATGTTTTCGGACATTTGCCGATGTTTTCTATTTGCTTAACATGTTCATAAAGTTTAGGACAGCCTTTGTGTCACCAAGTTCTAGGGTTTTTGGGAGAGGTGAACTTGTTATGGATCCGAGGTTGATTGCGAGACGGTATTTGAGATCTGAGTTTTTCTTAGATCTTTTTGCTGCACTGCCTCTTCCTCAGATTGTGATTTGGTTTATAATGCCAGCAATTAGAAGCTCGCATGCTGATCATACGAACAATGCTCTTGTACTGATTGTTCTGATTCAATATGTTCCCAGATTGTATATGATTTTCCCATTAAGTTCTCAGATTGTTAAGGCTACCGGTGTTGTCACAAAGACGGCTTGGGCAGGAGCTGCTTACAATCTTTTACTTTACTTGTTAGCTAGTCATGTGTTGGGGGCATCATGTACTATAAACGATGATGATCGCACGAAGTGGGCGAATACTACTTCTTTGTTTGGTAACTGCAATCCTGAAAGTAGCACAAGTTTCAAGTATGGAATTTTTGGAATTGCTGTGGAAAATAATGTTCTCTCCTCTGTGTTTATAGAGAAGTACCTCTATTGTTTGTGGTGGGGATTGCAGAATTTGAGTTCATATGGTCAGGGTTTGACTACAAGTACATTTGTTTGGGAAACTGCATTTGCGATACTTATATCTATCGTAGGTCTAGTTTTGTTTGCTCACTTAATCGGTAACATGCAGACATATTTGCAATCTATTACTGTGAGACTTGAAGAGTGGAGGCTCAAGCGACGTGACACAGAAGAGTGGATGAAACATCGTCAACTCCCACAATTTCTTAGAGAGCGTGTCCGGAGATTTGTTCAGTACAAATGGCTTGCAACTCGGGGTGTTGATGAAGAAACAATCCTAAGAGGCCTCCCTACTGACCTTCGTAGAGATATCCAGCGCCATCTTTGCTTAGACCTTGTTCGACGTGTTCCCTTTTTCTCACAAATGGATGATCAACTACTTGACGCAATATGTGAGCGGTTGGTATCATCCTTGAGCACTCAAGGCACATACATTGTCAGAGAAGGAGATCCAGTTACCGAGATGCTTTTTATCATCAGAGGGAGGCTTGAAAGTTCAACCACTAATGGTGGAAGAACTGGTTTCTTTAACTCTATAACCTTGAGGCCTGGTGATTTCTGTGGAGAAGAGTTACTTGCTTGGGCATTGCTTCCAAAATCTACTCTCAACTTGCCTTCTTCTACAAGAACAGTTAAAGCACTTGTTGAAGTTGAAGCCTTTGAACTTAGAGCAGAAGATCTTAAATTTGTTGCGAATCAGTTTAGACGTCTCCACAGCAAAAAGTTACAGCATACGTTCCGTTTCTACTCTTACCATTGGAGGACATGGGCTGCTTGTTTCATCCAGGCTGCTTGGCGCCGGTTCAAAAAGAGAGTATTGGCAAATAGCCTTAGCTTGAGGGAATACAAGTCCTTCATTGATGAACAATTAAGAGATCAAATGGAACGTGAGGAAGAAGAGCGGAGTTCTGTGACTTCAAACACTGCACAGGTAAAACAAAATCTCGGTGTCACTATACTGGCTTCAAGATTTGCTGCAAACACAAGGAAAGGTGTTCAGAAGATCAAAGATGTAGAGATGCTCAAGTTTCAAAAGCCTGAAGAGCCAGATTTCTCAGTAGAGCCTGAAGATGATTAA 2052 0.3991 MELKNEKLARFSNDGKFNLEKPMQFYKIPKILVPDGKISIGDTDNDKNRMNIKFPRNHEQWKKRILDPGSDIFLEWKRAFLFSSILSLFVDPLFFYLPSVAIATDKSSSCMVTDLNLGIVVTCFRTFADVFYLLNMFIKFRTAFVSPSSRVFGRGELVMDPRLIARRYLRSEFFLDLFAALPLPQIVIWFIMPAIRSSHADHTNNALVLIVLIQYVPRLYMIFPLSSQIVKATGVVTKTAWAGAAYNLLLYLLASHVLGASCTINDDDRTKWANTTSLFGNCNPESSTSFKYGIFGIAVENNVLSSVFIEKYLYCLWWGLQNLSSYGQGLTTSTFVWETAFAILISIVGLVLFAHLIGNMQTYLQSITVRLEEWRLKRRDTEEWMKHRQLPQFLRERVRRFVQYKWLATRGVDEETILRGLPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLSTQGTYIVREGDPVTEMLFIIRGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLPKSTLNLPSSTRTVKALVEVEAFELRAEDLKFVANQFRRLHSKKLQHTFRFYSYHWRTWAACFIQAAWRRFKKRVLANSLSLREYKSFIDEQLRDQMEREEEERSSVTSNTAQVKQNLGVTILASRFAANTRKGVQKIKDVEMLKFQKPEEPDFSVEPEDD 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05358 683 SUPERFAMILY cAMP-binding domain-like 373 565 IPR018490 -
Trre5g05358 683 Coils Coil 612 632 - -
Trre5g05358 683 Pfam Ion transport protein 76 370 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Trre5g05358 683 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 52 676 - -
Trre5g05358 683 SUPERFAMILY Voltage-gated potassium channels 69 365 - -
Trre5g05358 683 CDD CAP_ED 443 574 IPR000595 -
Trre5g05358 683 Gene3D Jelly Rolls 441 561 IPR014710 -
Trre5g05358 683 SMART cnmp_10 443 574 IPR000595 -
Trre5g05358 683 Gene3D - 93 369 - -
Trre5g05358 683 PRINTS EAG/ELK/ERG potassium channel family signature 356 365 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre5g05358 683 PRINTS EAG/ELK/ERG potassium channel family signature 136 145 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre5g05358 683 PRINTS EAG/ELK/ERG potassium channel family signature 338 349 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre5g05358 683 PRINTS EAG/ELK/ERG potassium channel family signature 312 329 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre5g05358 683 PRINTS EAG/ELK/ERG potassium channel family signature 406 413 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre5g05358 683 FunFam Cyclic nucleotide-gated ion channel 1 441 559 - -
Trre5g05358 683 Pfam Cyclic nucleotide-binding domain 466 554 IPR000595 -
Trre5g05358 683 ProSiteProfiles cAMP/cGMP binding motif profile. 443 526 IPR000595 -
Trre5g05358 683 Gene3D Helix hairpin bin 371 434 - -
Trre5g05358 683 FunFam Cyclic nucleotide-gated ion channel 1 370 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05358 Trre-Chr5 54351108 54353900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05358 54 679 Ion Channels AT2G24610 68.966 0.0 925
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05358 K05391 - gmx:100803334 1113.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05358 5 54351108 54353900 Trre5g05358 5 54351108 54353900 ECH