Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05354 ATGGATTCCGACGATGATATGCACGGTGCCAACGATATTGAGTCTCTCGATGACGATTTCTCCGGTGGTGAAACAGAAGAAGATGATCCCATGGATAACTGCAGCGGTTATGAAGATGATGATGCTGATGACTTTGGCAAGCGAACCGATCAAAGTTTTACCATATTGAAAGAATCAGATATACGGCAACAGCAGAAAGATGATATCAGTAGAGTAGCAGCAGTTCTTTCCATACCACATGTTGCTGCAACCATCTTACTCTGTCATTATAATTGGAGCTTCGGTAGAGTTAACGATGCTTGGTTCACCGACGAAGCTTCTTGTGGTCATCCATTCTGTTTTTCATGCTGGGGAGGATATATTGGTACTTCAATTCGAGATGGTCCGGGTTGCTTGATGCTGAGATGTCCTGATCCCGGTTGTGGTGCCGCTGTTGATCGAGATATGATTAATCTTTTTGCGTCTAAGGAAGATAACGACAAGTATGATTGTTACCTTCTCAGATCTTACATTGAAGATAATAAGAAAATCAAGTGGTGTCCTGCTCCTGGTTGTGAACATGCTGTTAATTTTGATGCTGGAACCGGAAAAAATTATGATGTATCTTGCCTCTGTTCATATAGCTTTTGTTGGAATTGCACCGAAGAGGCTCACCGTCCGGTGGATTGTGACACCGTGTCAAAGTGGATTATAAAAAACAGTGCAGAATCCGAAAACACAAACTGGATACTTGCTTACACAAAGCCATGTCCCAAGTGCAAGAAACCGATCGAAAAAAACCAAGGGTGCTCGCATATGACATGTCGCCCACCTTGTGGATTTGAATTTTGCTGGCTATGTCTTGGTTCTTACAGAGAACATAGGGGTTCTTGCAATCGTTATGAAGCGGCTAAACAAGATGAAACTGAAAATAGAAGAGAAATGGCAAAGAAATCACTGGAGAGGTACACACATTATTACGAGCGATGGGCTAGCAACGAATCTTCAAGGCAAAAAGCTGTTGCTGATCTACAAAAGATGCCAACTGTTGTTGATAGCCTTATTGGAACACAGGGCCAACCTGCGGGGCAGCTTAAATTCATAAATGAGGCTTGGTTACAGATAGTTGAGTGCAGGCTGATATTGAAGTGGACATATGCATATGGATACTATTTACCTGAATTTGAGCAAGCTAAAAAGCAGTTATTTGAGTACTTACAAGGTGAGGCAGAATCAGGTTTGGAGAGACTTCATCAATGTGCTGAAAAGGAACTCCAAGTATTCCTCGGCTTGGATGCCGCGTCTAAAGAATTCGATGATTTTCGTGAAAGACTAGTTAAATTGACCACTGTCACTAGAAACTACTTTGAGAATTTGGTTAGGGCATTAGAGAATGGTTTATGTGATGTGGATAGCAGTGGAATAACTTATCAGCATTGGTTTTGTGAGCAATGTACCTTTGCAAATGTCAAATCTGCCACCGCATGCGAGATGTGCAATCAACAACGTCCATTTTGA 1497 0.4195 MDSDDDMHGANDIESLDDDFSGGETEEDDPMDNCSGYEDDDADDFGKRTDQSFTILKESDIRQQQKDDISRVAAVLSIPHVAATILLCHYNWSFGRVNDAWFTDEASCGHPFCFSCWGGYIGTSIRDGPGCLMLRCPDPGCGAAVDRDMINLFASKEDNDKYDCYLLRSYIEDNKKIKWCPAPGCEHAVNFDAGTGKNYDVSCLCSYSFCWNCTEEAHRPVDCDTVSKWIIKNSAESENTNWILAYTKPCPKCKKPIEKNQGCSHMTCRPPCGFEFCWLCLGSYREHRGSCNRYEAAKQDETENRREMAKKSLERYTHYYERWASNESSRQKAVADLQKMPTVVDSLIGTQGQPAGQLKFINEAWLQIVECRLILKWTYAYGYYLPEFEQAKKQLFEYLQGEAESGLERLHQCAEKELQVFLGLDAASKEFDDFRERLVKLTTVTRNYFENLVRALENGLCDVDSSGITYQHWFCEQCTFANVKSATACEMCNQQRPF 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05354 498 FunFam RBR-type E3 ubiquitin transferase 96 174 - -
Trre5g05354 498 SUPERFAMILY RING/U-box 106 172 - -
Trre5g05354 498 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 173 IPR013083 -
Trre5g05354 498 ProSiteProfiles Zinc finger RanBP2 type profile. 465 498 IPR001876 -
Trre5g05354 498 CDD BRcat_RBR_ANKIB1 167 232 - -
Trre5g05354 498 MobiDBLite consensus disorder prediction 1 15 - -
Trre5g05354 498 FunFam RBR-type E3 ubiquitin transferase 224 463 - -
Trre5g05354 498 Pfam Ariadne domain 300 461 IPR045840 -
Trre5g05354 498 SUPERFAMILY RING/U-box 242 293 - -
Trre5g05354 498 Pfam IBR domain, a half RING-finger domain 235 291 IPR002867 GO:0008270
Trre5g05354 498 Pfam IBR domain, a half RING-finger domain 161 223 IPR002867 GO:0008270
Trre5g05354 498 ProSiteProfiles TRIAD supradomain profile. 84 295 IPR044066 -
Trre5g05354 498 Coils Coil 291 311 - -
Trre5g05354 498 SUPERFAMILY RING/U-box 160 231 - -
Trre5g05354 498 ProSitePatterns Zinc finger RanBP2-type signature. 473 492 IPR001876 -
Trre5g05354 498 MobiDBLite consensus disorder prediction 1 45 - -
Trre5g05354 498 Gene3D - 219 463 - -
Trre5g05354 498 MobiDBLite consensus disorder prediction 17 39 - -
Trre5g05354 498 SMART ibrneu5 236 291 IPR002867 GO:0008270
Trre5g05354 498 SMART ibrneu5 160 223 IPR002867 GO:0008270
Trre5g05354 498 Gene3D - 467 498 - -
Trre5g05354 498 SUPERFAMILY Ran binding protein zinc finger-like 471 496 IPR036443 -
Trre5g05354 498 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 86 378 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05354 Trre-Chr5 54325094 54326704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05354 17 496 ARIADNE family AT1G65430 55.420 0.0 606
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05354 K11968 - gmx:100810427 764.222